CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00507
OQU83188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	EES00507	AT4G15930.1	21798944
AT4G36970.1	OQU83188	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020387_P001	Maize	nucleus, plastid	11.77	85.88
Zm00001d017576_P001	Maize	nucleus, plastid	11.77	85.88
Zm00001d039978_P001	Maize	nucleus, plastid	11.61	84.71
Zm00001d019245_P001	Maize	nucleus	11.61	84.71
Zm00001d050017_P001	Maize	nucleus	67.1	62.0
Os08t0471800-01	Rice	nucleus	57.74	59.47
Zm00001d010608_P001	Maize	nucleus	15.16	58.39
Zm00001d020329_P001	Maize	plastid	15.16	50.54
KXG35763	Sorghum	nucleus	47.26	47.33
VIT_07s0031g00610.t01	Wine grape	plastid	23.87	36.82
VIT_18s0001g10420.t01	Wine grape	nucleus	31.45	34.21
KRH52008	Soybean	mitochondrion	25.81	33.54
Solyc02g064990.2.1	Tomato	nucleus	20.48	32.82
KRH04616	Soybean	nucleus	21.61	32.68
Solyc04g078810.2.1	Tomato	nucleus	30.32	32.53
PGSC0003DMT400020667	Potato	nucleus	30.32	32.47
PGSC0003DMT400010346	Potato	plastid	19.68	32.28
KRH57952	Soybean	nucleus	21.45	32.13
PGSC0003DMT400065490	Potato	nucleus	19.52	31.51
PGSC0003DMT400020663	Potato	nucleus	25.97	31.38
Solyc02g090900.2.1	Tomato	plastid	19.03	31.3
KRH15372	Soybean	nucleus	30.16	30.61
KXG31173	Sorghum	nucleus	28.55	30.31
KRH77003	Soybean	nucleus, plastid	20.0	30.17
KRH28469	Soybean	nucleus, plastid	19.84	30.15
KRH05674	Soybean	nucleus	28.87	29.39
Bra014045.1-P	Field mustard	nucleus, plastid	24.35	29.32
CDY42723	Canola	nucleus, plastid	18.71	29.22
CDY17058	Canola	nucleus, plastid	24.19	29.13
Bra017801.1-P	Field mustard	plastid	17.74	29.1
CDY43217	Canola	nucleus	24.19	29.07
CDX69276	Canola	nucleus, plastid	19.68	28.84
AT1G45207.2	Thale cress	nucleus, plastid	25.81	28.83
KRH66111	Soybean	nucleus	9.19	28.64
CDX75626	Canola	nucleus, plastid	19.68	28.57
Bra011737.1-P	Field mustard	nucleus, plastid	19.52	28.4
AT4G36970.1	Thale cress	plastid	19.03	27.63
CDY67768	Canola	plastid	11.77	26.35

Protein Annotations

EnsemblPlants:KXG25311	EnsemblPlantsGene:SORBI_3007G155400	InterPro:Remorin_C	PANTHER:PTHR31471	PANTHER:PTHR31471:SF37	PFAM:PF03763
ProteinID:KXG25311	ProteinID:KXG25311.1	SEG:seg	UniParc:UPI00081AD3E7	UniProt:A0A1B6PI04	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:+:58953607..58959132

Molecular Weight (calculated)

66582.7 Da

IEP (calculated)

10.614

GRAVY (calculated)

-0.715

Length

620 amino acids

Sequence
(BLAST)

001: MRVGDGGEIG AGLRGGGGAV VRRRRRRRCG AVVEDGEASG WSASSTSRGS SARGSSGGDS PLTRFVRRGG RLGTDPERDE TTLTSSSSYA SAGSTEPQEE
101: DDDAALEAAK DKRWAHARAR PQGQQTKNAA VPCFTGERQD QQRHRLGAVL FQGSRKDRAH QRPASLDFGS PGVARSSTHS PGFPVTGVVG VMNKGLGISN
201: SSHGRPDVMS SPGTPSYNRR GMTTGVGYQQ GSNSERAIPP SAGHRWHPGS SMVLPYSSGR TLPSKWEDAE RWIFSPNPNN NALGRSVPQL WRPKSKSGPL
301: GPPGRFGGAY SCVSSSTQFL DNGRVGSLAV NAPYLSGVLL PEHACGGVMD WGRDLSGVSG DDSSNGRGGR SAQMNGRHPA MRSARVSQQP GSAVESYQSL
401: PTTSLESIQD GVIESIKDSA TSSAPIIVRK DVATQTSPDI SRSSSPSMRA SFSRSLSAQE VKELESCFSK LEVRDVQVDD RVTLTRWSKK HVTRGSDKNA
501: PNIIEWKKKT VDSKSSSETA KLISKINGEE AKMTAWENMQ KTEAEAAIQK LVIKIEKKRP YSLERIFNTL RSGSWKTQVV HSTSTIKQDQ HISRTIKTAP
601: HLSKNGQMSS LSGCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.