Factsheet for Solyc04g078810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020663	Potato	nucleus	84.78	95.52
PGSC0003DMT400020667	Potato	nucleus	95.67	95.51
VIT_18s0001g10420.t01	Wine grape	nucleus	65.05	65.96
KRH05674	Soybean	nucleus	59.52	56.49
KRH15372	Soybean	nucleus	58.82	55.65
KRH52008	Soybean	mitochondrion	44.12	53.46
GSMUA_Achr5P05710_001	Banana	plastid	35.47	50.25
GSMUA_Achr8P23340_001	Banana	plastid	35.29	50.12
Bra014045.1-P	Field mustard	nucleus, plastid	44.46	49.9
CDY17058	Canola	nucleus, plastid	44.46	49.9
CDY43217	Canola	nucleus	43.6	48.84
AT1G45207.2	Thale cress	nucleus, plastid	46.71	48.65
Solyc02g064990.2.1	Tomato	nucleus	31.31	46.77
Solyc02g090900.2.1	Tomato	plastid	30.45	46.68
Zm00001d020387_P001	Maize	nucleus, plastid	6.57	44.71
Zm00001d017576_P001	Maize	nucleus, plastid	6.57	44.71
Zm00001d039978_P001	Maize	nucleus, plastid	6.4	43.53
Zm00001d019245_P001	Maize	nucleus	6.4	43.53
Os02t0767000-01	Rice	nucleus	35.29	40.24
GSMUA_Achr3P07010_001	Banana	nucleus	39.45	39.86
Zm00001d005881_P002	Maize	nucleus	25.78	39.84
TraesCS6A01G333200.1	Wheat	nucleus	37.37	37.7
KXG31173	Sorghum	nucleus	37.72	37.33
TraesCS6B01G363600.1	Wheat	nucleus	36.85	36.29
Zm00001d052157_P006	Maize	plastid	36.16	36.22
Zm00001d010608_P001	Maize	nucleus	9.69	34.78
HORVU6Hr1G080620.6	Barley	nucleus	36.51	34.42
KXG35763	Sorghum	nucleus	36.68	34.25
Os08t0471800-01	Rice	nucleus	35.64	34.22
HORVU5Hr1G068200.5	Barley	nucleus	36.33	34.15
TraesCS5B01G235500.1	Wheat	nucleus	35.99	33.82
TraesCS5D01G244300.2	Wheat	nucleus	35.81	33.66
Zm00001d020708_P001	Maize	cytosol	35.81	33.66
TraesCS5A01G237300.2	Wheat	nucleus	35.99	33.44
Zm00001d018179_P015	Maize	nucleus	36.33	33.28
Os09t0456100-01	Rice	nucleus	35.12	32.74
KXG25311	Sorghum	nucleus	32.53	30.32
TraesCS6D01G312000.1	Wheat	nucleus, plastid	36.16	29.35
Zm00001d020329_P001	Maize	plastid	9.34	29.03
Zm00001d050017_P001	Maize	nucleus	33.05	28.46

Protein Annotations

EnsemblPlants:Solyc04g078810.2.1	EnsemblPlantsGene:Solyc04g078810.2	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13	PFAM:PF03763	SEG:seg
UniParc:UPI0002766DF1	UniProt:K4BUW6	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4:-:63472496..63477228

Molecular Weight (calculated)

63420.6 Da

IEP (calculated)

10.257

GRAVY (calculated)

-0.668

Length

578 amino acids

Sequence
(BLAST)

001: MPELGFQDSR SGLGFSRSVR DVSPDSVIYT GDSNFSIFSS ASGSVDRCSF ASDAHDQDSS VSDVSQHLAG HECREASGGT VTDPNKAMLH RNSHIGRKEK
101: AKVQKAEKNS EIETEDENLS LDSARNSFSQ ALKECQDRRF GSGSLLKKPD RRRPASLDLN NAVINTCHSS SPRFGIMKKT PITTSRVGTF LSPRTPSYRH
201: SSVGVQKGWS SERVPLHSAG NRRQVNTALL PYNNGRILPS KWEDAERWIF SPVSGDSSVR TSLHQPQRRP KSKSGPLGPP GQAYYSMYSP APPVFKGGNG
301: GNLLANSPFS AGVMTNDGLS IRCGGNLGSG NFQALAEPCM ARSVSVHGCS ELVCLSTLPI SQDESGDYIQ DEANVVSRVI SRRDMATQMS PEASPSSSPI
401: RQSSFSPSTP SILPLVELQT VPSSKAELRD VPIDERVTVT RWSKKQKARI PGRSMDLDDW KRKAIEIRSS GWDVSDTSTS ISKIKREEAR ITAWENLQKA
501: KAEAAMRKLE MKLEKKRSSS MDKIMNKLRS AQKKAHEMRS SMLANQSHEV RRSSSKALSF RQTRQIGSLS GCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.