Factsheet for TraesCS6A01G333200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175300.1
TraesCS3B01G205000.1
TraesCS3D01G180700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	TraesCS3A01G175300.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3B01G205000.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3D01G180700.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G363600.1	Wheat	nucleus	91.1	88.93
HORVU6Hr1G080620.6	Barley	nucleus	87.26	81.57
Os02t0767000-01	Rice	nucleus	71.38	80.67
KXG31173	Sorghum	nucleus	74.87	73.46
Zm00001d052157_P006	Maize	plastid	73.12	72.62
TraesCS6D01G312000.1	Wheat	nucleus, plastid	84.64	68.12
Zm00001d018179_P015	Maize	nucleus	70.16	63.71
GSMUA_Achr8P23340_001	Banana	plastid	41.36	58.23
GSMUA_Achr5P05710_001	Banana	plastid	39.44	55.39
GSMUA_Achr3P07010_001	Banana	nucleus	45.72	45.8
VIT_07s0031g00610.t01	Wine grape	plastid	31.76	45.27
KRH66111	Soybean	nucleus	15.18	43.72
VIT_18s0001g10420.t01	Wine grape	nucleus	40.66	40.88
KRH52008	Soybean	mitochondrion	33.68	40.46
Solyc02g090900.2.1	Tomato	plastid	26.18	39.79
PGSC0003DMT400010346	Potato	plastid	25.83	39.15
KRH77003	Soybean	nucleus, plastid	27.92	38.93
PGSC0003DMT400065490	Potato	nucleus	26.0	38.8
Solyc02g064990.2.1	Tomato	nucleus	26.18	38.76
KRH04616	Soybean	nucleus	27.23	38.05
KRH28469	Soybean	nucleus, plastid	27.05	37.99
Solyc04g078810.2.1	Tomato	nucleus	37.7	37.37
KRH57952	Soybean	nucleus	26.88	37.2
PGSC0003DMT400020667	Potato	nucleus	37.52	37.13
KRH15372	Soybean	nucleus	39.09	36.66
KRH05674	Soybean	nucleus	38.39	36.12
PGSC0003DMT400020663	Potato	nucleus	31.94	35.67
Bra017801.1-P	Field mustard	plastid	23.21	35.19
CDY17058	Canola	nucleus, plastid	31.41	34.95
Bra014045.1-P	Field mustard	nucleus, plastid	31.41	34.95
CDY43217	Canola	nucleus	31.06	34.5
CDX69276	Canola	nucleus, plastid	25.31	34.28
CDY42723	Canola	nucleus, plastid	23.73	34.26
AT1G45207.2	Thale cress	nucleus, plastid	32.98	34.05
AT4G36970.1	Thale cress	plastid	25.31	33.96
Bra011737.1-P	Field mustard	nucleus, plastid	25.13	33.8
CDX75626	Canola	nucleus, plastid	24.78	33.26
TraesCS5A01G237300.2	Wheat	nucleus	35.78	32.96
CDY67768	Canola	plastid	14.49	29.96

Protein Annotations

EnsemblPlants:TraesCS6A01G333200.1	EnsemblPlantsGene:TraesCS6A01G333200	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6A:+:564389855..564395076

Molecular Weight (calculated)

61525.1 Da

IEP (calculated)

10.051

GRAVY (calculated)

-0.738

Length

573 amino acids

Sequence
(BLAST)

001: MPRAAPGLGF PAAATDPAPE RRHPPSSRRK KPPPPPAPPV GPRGAADPDP GLLHHLHPRG GSHASRATAP RDEDDGDDEE GGYDAAAGDS FSRSLKECQK
101: QLQRRAEARP AAASHELGNG DAFGGIELLV LSPRCLLGAA VGGMSKSSTA SSRSRSGTFP SPGTPSYNRH CAGNMQYPKG WSSERVPLGA GANRRYGGSG
201: VVLPFNNGRK LPSKWEDAEK WILSPVSCDG MGRMSAPAPH HRRPKSKSGP LGHPAGVPGA YASVSPMIPC FDGVLAAANF AAHSPFSAGV LMPGHARNGD
301: FSSGRARSGD DGSSRSYSAE KEPYIWRSAS THAWTETLME ASAFAHISEE AAQDDVLRGQ QGATPAISSP VIKKDVATQM SPDDSIISSS PKARHSCSSL
401: PSGDTIRESN SHTPKVEVRD VQVDDQVTVT RWSKRHVTRG SDKRSTNIVE WRKKTTEARA PSFDEKERER CISKCKREEA KITAWENLQK AKAEAAIRKL
501: EMKLEKKRSS SMDRILGKLR SAQKKAQGMR TTVSVSEDQC AVSEDQCAVR ATKKASLRRT GKPFSCCFTY HAC

Best Arabidopsis Sequence Match ( AT4G36970.1 )
(BLAST)

001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.