Factsheet for Bra017801.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017974.1-P
Bra038059.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Bra017974.1-P	AT3G49580.1	21798944
AT4G36970.1	Bra038059.1-P	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42723	Canola	nucleus, plastid	93.92	89.42
AT4G36970.1	Thale cress	plastid	63.23	55.97
Bra011737.1-P	Field mustard	nucleus, plastid	60.58	53.76
Zm00001d020387_P001	Maize	nucleus, plastid	8.73	38.82
Zm00001d017576_P001	Maize	nucleus, plastid	8.73	38.82
Zm00001d039978_P001	Maize	nucleus, plastid	8.47	37.65
Zm00001d019245_P001	Maize	nucleus	8.47	37.65
VIT_07s0031g00610.t01	Wine grape	plastid	38.62	36.32
PGSC0003DMT400010346	Potato	plastid	35.71	35.71
KRH04616	Soybean	nucleus	38.36	35.37
KRH57952	Soybean	nucleus	37.57	34.3
Solyc02g090900.2.1	Tomato	plastid	33.86	33.95
PGSC0003DMT400065490	Potato	nucleus	33.86	33.33
KRH77003	Soybean	nucleus, plastid	36.24	33.33
KRH28469	Soybean	nucleus, plastid	35.71	33.09
Solyc02g064990.2.1	Tomato	nucleus	33.07	32.3
GSMUA_Achr8P23340_001	Banana	plastid	33.86	31.45
GSMUA_Achr5P05710_001	Banana	plastid	33.6	31.13
Zm00001d010608_P001	Maize	nucleus	12.7	29.81
Zm00001d020329_P001	Maize	plastid	14.02	28.49
Zm00001d005881_P002	Maize	nucleus	26.98	27.27
Os02t0767000-01	Rice	nucleus	35.98	26.82
Bra014045.1-P	Field mustard	nucleus, plastid	32.28	23.69
Zm00001d052157_P006	Maize	plastid	35.71	23.4
TraesCS6A01G333200.1	Wheat	nucleus	35.19	23.21
KXG31173	Sorghum	nucleus	35.45	22.95
GSMUA_Achr3P07010_001	Banana	nucleus	34.66	22.9
TraesCS6B01G363600.1	Wheat	nucleus	35.45	22.83
HORVU5Hr1G068200.5	Barley	nucleus	35.45	21.79
HORVU6Hr1G080620.6	Barley	nucleus	35.19	21.7
Os09t0456100-01	Rice	nucleus	35.45	21.61
KXG35763	Sorghum	nucleus	35.19	21.49
TraesCS5D01G244300.2	Wheat	nucleus	34.92	21.46
TraesCS5B01G235500.1	Wheat	nucleus	34.92	21.46
TraesCS5A01G237300.2	Wheat	nucleus	35.19	21.38
Os08t0471800-01	Rice	nucleus	33.33	20.93
Zm00001d020708_P001	Maize	cytosol	33.86	20.81
Zm00001d018179_P015	Maize	nucleus	34.13	20.44
TraesCS6D01G312000.1	Wheat	nucleus, plastid	35.19	18.68
KXG25311	Sorghum	nucleus	29.1	17.74
Zm00001d050017_P001	Maize	nucleus	28.04	15.8

Protein Annotations

EnsemblPlants:Bra017801.1	EnsemblPlants:Bra017801.1-P	EnsemblPlantsGene:Bra017801	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF2	PFAM:PF03763	SEG:seg	UniParc:UPI0002540CD3	UniProt:M4DMR6	MapMan:35.2

Description

AT4G36970 (E=3e-071) | remorin family protein

Coordinates

chrA03:+:30560425..30561832

Molecular Weight (calculated)

41588.7 Da

IEP (calculated)

10.926

GRAVY (calculated)

-0.730

Length

378 amino acids

Sequence
(BLAST)

001: MRKTSVSSSS SSFGGFLSPG APPSYTDNNK GWSYERVPHP SSSSSTSTIN APRRRIGSAS ALTTPFYGGR GIPSKWEDAE RWICSPAVTT NPQRRQKSKS
101: GPIAPPPPAL PHPRMTMMMR AVEAPPQGNS KKGLMVVGSP FSTGVLEAER VFRGSVGGGH GHSQSCADLM KEKEEVITRR DIATQMTPNN NHHSPQELSV
201: SVIEPPPCRV GGGEVREVKM DKGARLIKHP KRRVMSSSSR IIRRDHQPEA EPNSASWDIS EPAMTLFKLH REEAKIAAWE NLQKAKAEAA MRKLEVKLEK
301: KKSASMDKIL NKLQTAKLKA QDMRRSTTAS SGDHGKEEQI SRNSAKITTH LVRRHTFMSP FMTCFAPRVD CRKSSSAL

Best Arabidopsis Sequence Match ( AT4G36970.1 )
(BLAST)

001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.