Factsheet for PGSC0003DMT400065490

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400029467
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400029467	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064990.2.1	Tomato	nucleus	87.24	86.56
PGSC0003DMT400010346	Potato	plastid	62.24	63.23
VIT_07s0031g00610.t01	Wine grape	plastid	48.96	46.77
KRH57952	Soybean	nucleus	42.45	39.37
Zm00001d020387_P001	Maize	nucleus, plastid	8.59	38.82
Zm00001d019245_P001	Maize	nucleus	8.59	38.82
Zm00001d017576_P001	Maize	nucleus, plastid	8.59	38.82
GSMUA_Achr5P05710_001	Banana	plastid	41.15	38.73
KRH04616	Soybean	nucleus	40.89	38.29
KRH77003	Soybean	nucleus, plastid	40.89	38.2
GSMUA_Achr8P23340_001	Banana	plastid	40.36	38.08
Zm00001d039978_P001	Maize	nucleus, plastid	8.33	37.65
KRH28469	Soybean	nucleus, plastid	37.76	35.54
AT4G36970.1	Thale cress	plastid	38.54	34.66
CDX75626	Canola	nucleus, plastid	37.76	33.96
Bra017801.1-P	Field mustard	plastid	33.33	33.86
Bra011737.1-P	Field mustard	nucleus, plastid	37.5	33.8
CDX69276	Canola	nucleus, plastid	36.98	33.57
CDY42723	Canola	nucleus, plastid	34.38	33.25
PGSC0003DMT400020667	Potato	nucleus	45.31	30.05
Zm00001d010608_P001	Maize	nucleus	12.24	29.19
Zm00001d005881_P002	Maize	nucleus	28.39	29.14
Os02t0767000-01	Rice	nucleus	38.28	28.99
PGSC0003DMT400020663	Potato	nucleus	38.54	28.85
CDY67768	Canola	plastid	20.57	28.52
GSMUA_Achr3P07010_001	Banana	nucleus	40.89	27.45
Zm00001d020329_P001	Maize	plastid	13.28	27.42
KXG31173	Sorghum	nucleus	40.62	26.71
Zm00001d052157_P006	Maize	plastid	39.32	26.17
TraesCS6A01G333200.1	Wheat	nucleus	38.8	26.0
TraesCS6B01G363600.1	Wheat	nucleus	38.54	25.21
HORVU6Hr1G080620.6	Barley	nucleus	38.8	24.31
Zm00001d018179_P015	Maize	nucleus	37.76	22.98
KXG35763	Sorghum	nucleus	36.98	22.94
TraesCS5B01G235500.1	Wheat	nucleus	36.46	22.76
Os08t0471800-01	Rice	nucleus	35.68	22.76
TraesCS5D01G244300.2	Wheat	nucleus	36.2	22.6
Os09t0456100-01	Rice	nucleus	36.46	22.58
HORVU5Hr1G068200.5	Barley	nucleus	35.94	22.44
TraesCS5A01G237300.2	Wheat	nucleus	36.2	22.35
Zm00001d020708_P001	Maize	cytosol	34.64	21.63
TraesCS6D01G312000.1	Wheat	nucleus, plastid	38.28	20.65
KXG25311	Sorghum	nucleus	31.51	19.52
Zm00001d050017_P001	Maize	nucleus	31.25	17.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400065490	EnsemblPlantsGene:PGSC0003DMG400025471	EntrezGene:102590707	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF2	PFAM:PF03763	PGSC:PGSC0003DMG400025471	RefSeq:XP_006360217.1	SEG:seg	UniParc:UPI00029548EB
UniProt:M1CE31	MapMan:35.2	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025471]

Coordinates

chr2:-:23503605..23507571

Molecular Weight (calculated)

42158.4 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.753

Length

384 amino acids

Sequence
(BLAST)

001: MRKHNTSLRN SGTYTSPSTP EYGDDHFEGF QKGWSSERVP LPTNSSRRHI TATALMPFNS GRALPSKWDD AERWITSPVS GYATPKASSN VQLQKQPKSK
101: SGPLENPGLM FMPNYSPSVL VHEGGNRSNF VANSPFTTGV LVPDGLSIHY GVGSGSTSSA LYAENNMARA STAPGLSDFF AESSSQDDKA DGTKEPDSIS
201: PVVSCRDMAT QMSPDNSTHS SPKGRSPSIR SIEEPNDKHS AKVEIRDVQV DRGPPISGEL QRKGVRKTRK DLQNASDSNV PWDVADAERS MPKLQREEAR
301: INAWENLQKA KAEAAIQKLE VKLSKKRSAS MDKILNKLKL SQLKAQKLRG SLLEGHPTTS KTLFPFQKYF KITSFSSCFY CGVE

Best Arabidopsis Sequence Match ( AT4G36970.1 )
(BLAST)

001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.