CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH40946
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	KRH16959	AT3G49580.1	21798944
AT4G36970.1	KRH53667	AT3G49580.1	21798944
AT4G36970.1	KRH64261	AT3G49580.1	21798944
AT4G36970.1	KRH40946	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04616	Soybean	nucleus	80.19	80.98
KRH77003	Soybean	nucleus, plastid	52.66	53.04
KRH28469	Soybean	nucleus, plastid	51.93	52.7
VIT_07s0031g00610.t01	Wine grape	plastid	44.2	45.52
PGSC0003DMT400065490	Potato	nucleus	39.37	42.45
Solyc02g064990.2.1	Tomato	nucleus	38.65	41.34
Solyc02g090900.2.1	Tomato	plastid	37.2	40.85
PGSC0003DMT400010346	Potato	plastid	37.2	40.74
GSMUA_Achr8P23340_001	Banana	plastid	39.37	40.05
GSMUA_Achr5P05710_001	Banana	plastid	39.13	39.71
Zm00001d019245_P001	Maize	nucleus	7.97	38.82
Zm00001d017576_P001	Maize	nucleus, plastid	7.97	38.82
Zm00001d020387_P001	Maize	nucleus, plastid	7.97	38.82
Zm00001d039978_P001	Maize	nucleus, plastid	7.73	37.65
Bra017801.1-P	Field mustard	plastid	34.3	37.57
CDY42723	Canola	nucleus, plastid	34.54	36.02
Bra011737.1-P	Field mustard	nucleus, plastid	36.47	35.45
AT4G36970.1	Thale cress	plastid	36.23	35.13
CDX75626	Canola	nucleus, plastid	35.99	34.89
CDX69276	Canola	nucleus, plastid	35.27	34.52
CDY67768	Canola	plastid	22.71	33.94
Zm00001d005881_P002	Maize	nucleus	30.19	33.42
Zm00001d010608_P001	Maize	nucleus	12.56	32.3
KRH52008	Soybean	mitochondrion	36.96	32.08
KRH66111	Soybean	nucleus	14.49	30.15
Os02t0767000-01	Rice	nucleus	36.72	29.98
GSMUA_Achr3P07010_001	Banana	nucleus	38.89	28.15
KRH15372	Soybean	nucleus	41.3	27.99
Zm00001d020329_P001	Maize	plastid	12.56	27.96
KRH05674	Soybean	nucleus	40.34	27.42
KXG31173	Sorghum	nucleus	37.92	26.88
TraesCS6A01G333200.1	Wheat	nucleus	37.2	26.88
Zm00001d052157_P006	Maize	plastid	37.44	26.86
TraesCS6B01G363600.1	Wheat	nucleus	37.44	26.41
HORVU6Hr1G080620.6	Barley	nucleus	37.44	25.29
Os09t0456100-01	Rice	nucleus	37.44	25.0
KXG35763	Sorghum	nucleus	37.2	24.88
TraesCS5D01G244300.2	Wheat	nucleus	36.96	24.88
TraesCS5B01G235500.1	Wheat	nucleus	36.96	24.88
HORVU5Hr1G068200.5	Barley	nucleus	36.96	24.88
TraesCS5A01G237300.2	Wheat	nucleus	36.96	24.6
Os08t0471800-01	Rice	nucleus	35.75	24.58
Zm00001d020708_P001	Maize	cytosol	36.23	24.39
Zm00001d018179_P015	Maize	nucleus	36.47	23.93
TraesCS6D01G312000.1	Wheat	nucleus, plastid	37.44	21.77
KXG25311	Sorghum	nucleus	32.13	21.45
Zm00001d050017_P001	Maize	nucleus	31.16	19.23

Protein Annotations

EMBL:ACUP02003173	EnsemblPlants:KRH57952	EnsemblPlantsGene:GLYMA_05G095500	EntrezGene:100801357	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF2	PFAM:PF03763	ProteinID:KRH57951.1	ProteinID:KRH57952	ProteinID:KRH57952.1
SEG:seg	UniParc:UPI000233A265	UniProt:K7KP85	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr5:-:24741229..24746545

Molecular Weight (calculated)

45646.5 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.635

Length

414 amino acids

Sequence
(BLAST)

001: MKKSSSSSFQ NLGSFPSPGA PYYRERSIGS QKGWCSERVS KPSSSSGSIS RRHTMAGLTP FCGGRTMPSK WDEAERWICS PVSAYAESRS SHSQLQRRPK
101: SISGPIVPPG VAAFYSNYSP VLPLRQGLVV RNLVVGSPFS TGVLAPVAVS VHHFDAHDGT VFGYDLDSGM QFSSPVINEN GMVFSPLSTA APTCSELPCN
201: QSSPISEDEK HDGTMEGENV ASHSSRCDKG TQMSPGEIEN DSHSSPKSCA TSIVDQQQCH SSKLEVRDVE VDSQATIVRW SKRHATKLAK KDTLHSKDLR
301: EISAEAQASW DIDESNIDTS KLQREEAKII AWENLQKAKA ETAIRKLEMK LEKKRSSSTD KILNKLRRAQ LKAENMRSSI PVQQSHQVSK CRVFSFSKYA
401: QIWSPTSCFR SHDQ

Best Arabidopsis Sequence Match ( AT4G36970.1 )
(BLAST)

001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.