Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0256400-01 | |
| Os06t0492700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | Os01t0256400-01 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | Os06t0492700-00 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31173 | Sorghum | nucleus | 82.25 | 71.4 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 80.67 | 71.38 |
| Zm00001d052157_P006 | Maize | plastid | 79.88 | 70.19 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 81.07 | 70.02 |
| HORVU6Hr1G080620.6 | Barley | nucleus | 82.05 | 67.86 |
| Zm00001d018179_P015 | Maize | nucleus | 76.33 | 61.33 |
| GSMUA_Achr8P23340_001 | Banana | plastid | 47.14 | 58.72 |
| TraesCS6D01G312000.1 | Wheat | nucleus, plastid | 79.88 | 56.88 |
| GSMUA_Achr5P05710_001 | Banana | plastid | 44.77 | 55.64 |
| GSMUA_Achr3P07010_001 | Banana | nucleus | 52.66 | 46.68 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 36.09 | 45.52 |
| KRH66111 | Soybean | nucleus | 16.96 | 43.22 |
| KRH52008 | Soybean | mitochondrion | 38.66 | 41.09 |
| Solyc02g090900.2.1 | Tomato | plastid | 29.59 | 39.79 |
| PGSC0003DMT400010346 | Potato | plastid | 29.59 | 39.68 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 43.59 | 38.77 |
| Solyc02g064990.2.1 | Tomato | nucleus | 29.59 | 38.76 |
| KRH28469 | Soybean | nucleus, plastid | 30.97 | 38.48 |
| KRH77003 | Soybean | nucleus, plastid | 31.16 | 38.44 |
| PGSC0003DMT400065490 | Potato | nucleus | 28.99 | 38.28 |
| KRH04616 | Soybean | nucleus | 30.37 | 37.56 |
| KRH57952 | Soybean | nucleus | 29.98 | 36.72 |
| KRH15372 | Soybean | nucleus | 43.39 | 36.01 |
| Bra017801.1-P | Field mustard | plastid | 26.82 | 35.98 |
| Solyc04g078810.2.1 | Tomato | nucleus | 40.24 | 35.29 |
| CDY42723 | Canola | nucleus, plastid | 27.61 | 35.26 |
| PGSC0003DMT400020667 | Potato | nucleus | 40.24 | 35.23 |
| KRH05674 | Soybean | nucleus | 41.62 | 34.65 |
| CDX69276 | Canola | nucleus, plastid | 28.8 | 34.52 |
| AT4G36970.1 | Thale cress | plastid | 28.8 | 34.19 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 28.6 | 34.04 |
| PGSC0003DMT400020663 | Potato | nucleus | 34.32 | 33.92 |
| CDX75626 | Canola | nucleus, plastid | 28.21 | 33.49 |
| Os08t0471800-01 | Rice | nucleus | 39.25 | 33.06 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 33.14 | 32.62 |
| CDY17058 | Canola | nucleus, plastid | 32.94 | 32.43 |
| CDY43217 | Canola | nucleus | 32.94 | 32.36 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 35.11 | 32.07 |
| Os09t0456100-01 | Rice | nucleus | 38.26 | 31.29 |
| CDY67768 | Canola | plastid | 16.17 | 29.6 |
Protein Annotations
| EnsemblPlants:Os02t0767000-01 | EnsemblPlantsGene:Os02g0767000 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF13 |
| PFAM:PF03763 | ProteinID:BAS81071.1 | SEG:seg | UniParc:UPI000393ACBB | UniProt:A0A0P0VQD6 | MapMan:35.2 |
Description
REMORIN 5.1Remorin, C-terminal domain containing protein. (Os02t0767000-01)
Coordinates
chr2:-:32286725..32291225
Molecular Weight (calculated)
55028.4 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.746
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: GEEEEEEEEW RGDGDAGSEE EEGEAVSDSF SHSLRECQKQ RKLRAEGAAL LLSPAKHELT GGGGGSIELL VLSPRCLVGG NVGGMSKSST ASSRSRSGTF
101: PSPGTPNYHR HCASTMQYPK GWSSERVPLG GGTNRRYGGS GVVLPFNNGR KLPSKWEDAE KWILSPVSCD GIGRMSAPAP HHRRPKSKSG PLGHPGGIPG
201: AYAAASPFVP CFDGVLAAAN FAAHSPFSAG VLMPEHVRNG DFSSGRGRSG DDGSSRSYSA EKDPYILRSA SIHAWTETLM EASAFANISE ETAQDDKLQG
301: LRGETPAISS PIIKKDVATQ MSPDDSISSS PKARHSCSSL PSGHPIKEPN SNALKPEVRD VQVDDQVTVT RWSKRHVTRG SDRRSTNIVE WRKKTIETRA
401: PSFDEKERES CVSKCKREEA KITAWENLQK AKAEAAIRKL EMKLEKKRSS SMDRILGKLR TAQKKAQDMR SAVSVSEDQC GVRATKKASY LRRTGKSFSC
501: CFTYRAC
101: PSPGTPNYHR HCASTMQYPK GWSSERVPLG GGTNRRYGGS GVVLPFNNGR KLPSKWEDAE KWILSPVSCD GIGRMSAPAP HHRRPKSKSG PLGHPGGIPG
201: AYAAASPFVP CFDGVLAAAN FAAHSPFSAG VLMPEHVRNG DFSSGRGRSG DDGSSRSYSA EKDPYILRSA SIHAWTETLM EASAFANISE ETAQDDKLQG
301: LRGETPAISS PIIKKDVATQ MSPDDSISSS PKARHSCSSL PSGHPIKEPN SNALKPEVRD VQVDDQVTVT RWSKRHVTRG SDRRSTNIVE WRKKTIETRA
401: PSFDEKERES CVSKCKREEA KITAWENLQK AKAEAAIRKL EMKLEKKRSS SMDRILGKLR TAQKKAQDMR SAVSVSEDQC GVRATKKASY LRRTGKSFSC
501: CFTYRAC
001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.