CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014045.1-P	Field mustard	nucleus, plastid	98.83	98.83
CDY43217	Canola	nucleus	96.89	96.71
AT1G45207.2	Thale cress	nucleus, plastid	72.23	67.03
VIT_18s0001g10420.t01	Wine grape	nucleus	54.17	48.95
Solyc04g078810.2.1	Tomato	nucleus	49.9	44.46
PGSC0003DMT400020667	Potato	nucleus	49.9	44.39
PGSC0003DMT400020663	Potato	nucleus	41.75	41.91
KRH05674	Soybean	nucleus	49.32	41.71
KRH52008	Soybean	mitochondrion	38.45	41.51
KRH15372	Soybean	nucleus	49.13	41.41
Zm00001d017576_P001	Maize	nucleus, plastid	6.8	41.18
Zm00001d020387_P001	Maize	nucleus, plastid	6.8	41.18
Zm00001d019245_P001	Maize	nucleus	6.6	40.0
Zm00001d039978_P001	Maize	nucleus, plastid	6.6	40.0
GSMUA_Achr5P05710_001	Banana	plastid	30.68	38.73
GSMUA_Achr8P23340_001	Banana	plastid	30.29	38.33
Os02t0767000-01	Rice	nucleus	32.43	32.94
GSMUA_Achr3P07010_001	Banana	nucleus	36.12	32.52
Zm00001d005881_P002	Maize	nucleus	23.5	32.35
TraesCS6A01G333200.1	Wheat	nucleus	34.95	31.41
CDY42723	Canola	nucleus, plastid	24.08	31.23
CDX75626	Canola	nucleus, plastid	25.83	31.15
TraesCS6B01G363600.1	Wheat	nucleus	35.15	30.83
CDX69276	Canola	nucleus, plastid	25.24	30.73
Zm00001d010608_P001	Maize	nucleus	9.51	30.43
HORVU6Hr1G080620.6	Barley	nucleus	34.76	29.2
Zm00001d052157_P006	Maize	plastid	32.62	29.12
KXG31173	Sorghum	nucleus	33.01	29.11
Zm00001d020329_P001	Maize	plastid	10.29	28.49
KXG35763	Sorghum	nucleus	33.4	27.79
Zm00001d018179_P015	Maize	nucleus	33.01	26.94
Os08t0471800-01	Rice	nucleus	31.46	26.91
Zm00001d020708_P001	Maize	cytosol	32.04	26.83
CDY67768	Canola	plastid	14.17	26.35
TraesCS5A01G237300.2	Wheat	nucleus	31.65	26.21
TraesCS5B01G235500.1	Wheat	nucleus	31.26	26.18
HORVU5Hr1G068200.5	Barley	nucleus	30.87	25.85
TraesCS5D01G244300.2	Wheat	nucleus	30.68	25.69
Os09t0456100-01	Rice	nucleus	30.87	25.65
TraesCS6D01G312000.1	Wheat	nucleus, plastid	33.79	24.44
KXG25311	Sorghum	nucleus	29.13	24.19
Zm00001d050017_P001	Maize	nucleus	29.13	22.35

Protein Annotations

EnsemblPlants:CDY17058	EnsemblPlantsGene:GSBRNA2T00095039001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	ProteinID:CDY17058	ProteinID:CDY17058.1	SEG:seg	UniParc:UPI0004EE7958	UniProt:A0A078FXI7
MapMan:35.2	:	:	:	:	:

Description

BnaA08g04220DBnaA08g04220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXI7]

Coordinates

chrLK032069:+:656033..658738

Molecular Weight (calculated)

56794.8 Da

IEP (calculated)

10.679

GRAVY (calculated)

-0.795

Length

515 amino acids

Sequence
(BLAST)

001: MPSETKRPAR STASGGSRRD SSPDSLNFTP ESNLSLFSSA SVSVDRCSLT SDAHDRDSLV SAPSLERDQR VDPDKRGTGC KKNSRNSRKS IKVKAWKQEC
101: VVNKEDEIQN LDSARSSFSV ALRECQERKS RSEAVAKMLD NQRTTTSLDL SKKTSVSTNK SSVFPSPGTP TYTMQKGWSS ERVALGRSPP NAAFLPLYSG
201: RTVPSKWEDA ERWILSPLAR EEAARTSFTA SRRPKSKSGP LGPPGLAYYS LYSPAVPMVH GGNRGCLTSA SPFSARVLPQ NGSTAFPQKT EHCMARSVSI
301: HGCSQTLAPQ DDIHESIKDA AGDARAVSRR DMATQMSPEG SIRLSPEREC SLSSSSPTAR SIVKLLNARV NRAEAKDLQV DEKVTVTRWS KRHRSLHHGD
401: SSNMRDHLHG QDRDPQGLTW VKNEEARIIS WQNLQKAKAE AEIRKLEVKL EKKRSSSMAR IMRKVKSAEK KAEEMRRSVL DNQAPSASRG KALSFRRSGK
501: TKISSLSGCF TCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.