Factsheet for Zm00001d050017_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008330_P001
Zm00001d040291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT4G36970.1	Zm00001d040291_P001	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020387_P001	Maize	nucleus, plastid	11.77	92.94
Zm00001d017576_P001	Maize	nucleus, plastid	11.77	92.94
Zm00001d039978_P001	Maize	nucleus, plastid	11.62	91.76
Zm00001d019245_P001	Maize	nucleus	11.62	91.76
KXG25311	Sorghum	nucleus	62.0	67.1
Zm00001d010608_P001	Maize	nucleus	14.31	59.63
Os08t0471800-01	Rice	nucleus	52.01	57.97
Zm00001d005881_P002	Maize	nucleus	30.55	54.81
Zm00001d020329_P001	Maize	plastid	14.75	53.23
Zm00001d020708_P001	Maize	cytosol	40.83	44.55
VIT_07s0031g00610.t01	Wine grape	plastid	21.61	36.07
VIT_18s0001g10420.t01	Wine grape	nucleus	29.66	34.91
KRH52008	Soybean	mitochondrion	23.55	33.12
Solyc04g078810.2.1	Tomato	nucleus	28.46	33.05
PGSC0003DMT400020667	Potato	nucleus	28.32	32.82
Solyc02g064990.2.1	Tomato	nucleus	18.78	32.56
PGSC0003DMT400010346	Potato	plastid	18.03	32.01
KRH15372	Soybean	nucleus	28.91	31.75
KRH66111	Soybean	nucleus	9.39	31.66
Solyc02g090900.2.1	Tomato	plastid	17.73	31.57
KRH04616	Soybean	nucleus	19.23	31.46
PGSC0003DMT400020663	Potato	nucleus	23.99	31.38
PGSC0003DMT400065490	Potato	nucleus	17.88	31.25
KRH57952	Soybean	nucleus	19.23	31.16
KRH05674	Soybean	nucleus	27.72	30.54
Zm00001d052157_P006	Maize	plastid	25.78	29.98
AT1G45207.2	Thale cress	nucleus, plastid	24.74	29.91
KRH28469	Soybean	nucleus, plastid	18.03	29.66
CDY43217	Canola	nucleus	22.8	29.65
KRH77003	Soybean	nucleus, plastid	18.03	29.44
Bra014045.1-P	Field mustard	nucleus, plastid	22.5	29.32
CDY17058	Canola	nucleus, plastid	22.35	29.13
Bra017801.1-P	Field mustard	plastid	15.8	28.04
CDX69276	Canola	nucleus, plastid	17.59	27.9
CDY42723	Canola	nucleus, plastid	16.39	27.71
Bra011737.1-P	Field mustard	nucleus, plastid	17.44	27.46
Zm00001d018179_P015	Maize	nucleus	25.78	27.42
CDX75626	Canola	nucleus, plastid	17.44	27.4
AT4G36970.1	Thale cress	plastid	17.14	26.93
CDY67768	Canola	plastid	10.28	24.91

Protein Annotations

EnsemblPlants:Zm00001d050017_P001	EnsemblPlants:Zm00001d050017_T001	EnsemblPlantsGene:Zm00001d050017	EntrezGene:103653295	InterPro:Remorin_C	PANTHER:PTHR31471
PANTHER:PTHR31471:SF37	PFAM:PF03763	ProteinID:AQK51781.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000844DF3B
UniProt:A0A1D6PZC6	MapMan:35.2	:	:	:	:

Description

Remorin family protein

Coordinates

chr4:+:59929429..59934326

Molecular Weight (calculated)

70918.1 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.575

Length

671 amino acids

Sequence
(BLAST)

001: MLSPLSALSS AAAAAHAVVA GDGEMRVADG GGGGGAGETG AGLRGGVGGG AVVEDGHGEA SGGCSASRGS SARGSSGGDS PLTRFVRRGG RLGTMDPERD
101: EMLTSSSSYG STEPQEEEEE GAGALEAAKD NKRVHGARPQ GQTKNAAPCF TRGNATLPQY PFTWPLSAGI APEAESAMPT SCLIERQDQR HHRLGAVLFQ
201: GRKGRAQRPA SLDFGCPGVA RSSTHSPGFP AAGVAVVNKG MGVSYPSHSR PDVLSSPGTP SCNRRGMAGV GYQQGPRSER VIPPWTGHTS HSGSGMVLPY
301: STGTGRTLPS KWEDAERWIF SPNPNPNNAL GRSVPQLWRP KSKSGPLGPP GRFCGAYSCV SSSAQFLDNG RVGNLTVNAH YMAGMLLPEH ICGGVMDWER
401: DASGASGEDS SNGQGGCRPG QMNVRHPAMQ PTRVSQQHGS AMESYQSLHA SLQSIQDGGI ESIKDSATSS APIILRKDVA TQTSPAISRS SSPSTRTSFS
501: RSLSSQQVKE LESCFSKLEV RDVQVDDRVT LTRWSKKHVT RGSEKNATNI IECKKKTVDS KSSAWEVTQT AKCISMIEGE EAKMTAWENM QKAEAEAAIQ
601: KLVIKLEKKR PYSLERIFNT LRSGSRKTQV VRSTSTANQD QHISRTIKTA PNLSKNGQMS SLSGCFTCHA F

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.