Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra017974.1-P | |
| Bra038059.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT4G36970.1 | Bra038059.1-P | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75626 | Canola | nucleus, plastid | 82.39 | 82.2 |
| AT4G36970.1 | Thale cress | plastid | 69.72 | 69.56 |
| Bra017801.1-P | Field mustard | plastid | 53.76 | 60.58 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 38.73 | 41.04 |
| Solyc02g064990.2.1 | Tomato | nucleus | 35.68 | 39.28 |
| Solyc02g090900.2.1 | Tomato | plastid | 34.51 | 38.99 |
| PGSC0003DMT400010346 | Potato | plastid | 34.51 | 38.89 |
| Zm00001d020387_P001 | Maize | nucleus, plastid | 7.75 | 38.82 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 7.75 | 38.82 |
| Zm00001d039978_P001 | Maize | nucleus, plastid | 7.51 | 37.65 |
| Zm00001d019245_P001 | Maize | nucleus | 7.51 | 37.65 |
| PGSC0003DMT400065490 | Potato | nucleus | 33.8 | 37.5 |
| GSMUA_Achr8P23340_001 | Banana | plastid | 34.98 | 36.61 |
| KRH57952 | Soybean | nucleus | 35.45 | 36.47 |
| KRH04616 | Soybean | nucleus | 34.98 | 36.34 |
| GSMUA_Achr5P05710_001 | Banana | plastid | 34.74 | 36.27 |
| KRH77003 | Soybean | nucleus, plastid | 34.27 | 35.52 |
| KRH28469 | Soybean | nucleus, plastid | 33.57 | 35.05 |
| Zm00001d010608_P001 | Maize | nucleus | 11.74 | 31.06 |
| Zm00001d005881_P002 | Maize | nucleus | 27.23 | 31.02 |
| Os02t0767000-01 | Rice | nucleus | 34.04 | 28.6 |
| Zm00001d020329_P001 | Maize | plastid | 11.97 | 27.42 |
| GSMUA_Achr3P07010_001 | Banana | nucleus | 36.38 | 27.1 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 30.75 | 25.44 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 33.8 | 25.13 |
| KXG31173 | Sorghum | nucleus | 33.8 | 24.66 |
| Zm00001d052157_P006 | Maize | plastid | 32.86 | 24.26 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 33.33 | 24.19 |
| Os08t0471800-01 | Rice | nucleus | 33.1 | 23.42 |
| HORVU6Hr1G080620.6 | Barley | nucleus | 33.57 | 23.33 |
| KXG35763 | Sorghum | nucleus | 33.57 | 23.1 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 33.57 | 22.99 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 33.1 | 22.93 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 33.1 | 22.93 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 33.1 | 22.93 |
| Os09t0456100-01 | Rice | nucleus | 33.1 | 22.74 |
| Zm00001d020708_P001 | Maize | cytosol | 32.39 | 22.44 |
| Zm00001d018179_P015 | Maize | nucleus | 32.63 | 22.03 |
| TraesCS6D01G312000.1 | Wheat | nucleus, plastid | 33.1 | 19.8 |
| KXG25311 | Sorghum | nucleus | 28.4 | 19.52 |
| Zm00001d050017_P001 | Maize | nucleus | 27.46 | 17.44 |
Protein Annotations
Description
AT4G36970 (E=1e-138) | remorin family protein
Coordinates
chrA01:-:816328..817922
Molecular Weight (calculated)
46278.7 Da
IEP (calculated)
10.411
GRAVY (calculated)
-0.692
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKTSLSSNS FGGFLSPGAA PSSYSDNKGW SSERVPHPSS STASSTPTLN NGHGPRRHLG SSSALTTPFY SGRAVPSKWE DAERWICSPV AAYPPGVCAN
101: LSSQFSEQRR QKSKSGPIVP PTLPHPPPYS PRLRAMEAAP KGLMVSGSPF STGVLEAERV FRGSVGGSGG GGGHGHSRSW VDLMSEETSS LSSKTDTEDR
201: KGTAAQSPVV SRRDIATQMS PEEMSPDPQE LLSPPLVVSV IDETPPPPCR GGGEVREVKM DKGAKMIKRP KRRVMSSSSR VVMRREEQPP EVEDNSEASA
301: SSSSWDISEP AMTLSKLQRE EAKIAAWENL QKAKAEAAIR KLEVKLEKKK SASMDKILNK LQSAKLKAQE MRRSSVSVSS DHQQEQQQVS RNSVKITHLV
401: RRHTFMTPFM ACFAPRVDCR KSPSAL
101: LSSQFSEQRR QKSKSGPIVP PTLPHPPPYS PRLRAMEAAP KGLMVSGSPF STGVLEAERV FRGSVGGSGG GGGHGHSRSW VDLMSEETSS LSSKTDTEDR
201: KGTAAQSPVV SRRDIATQMS PEEMSPDPQE LLSPPLVVSV IDETPPPPCR GGGEVREVKM DKGAKMIKRP KRRVMSSSSR VVMRREEQPP EVEDNSEASA
301: SSSSWDISEP AMTLSKLQRE EAKIAAWENL QKAKAEAAIR KLEVKLEKKK SASMDKILNK LQSAKLKAQE MRRSSVSVSS DHQQEQQQVS RNSVKITHLV
401: RRHTFMTPFM ACFAPRVDCR KSPSAL
001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.