Factsheet for TraesCS6B01G363600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175300.1
TraesCS3B01G205000.1
TraesCS3D01G180700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	TraesCS3A01G175300.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3B01G205000.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3D01G180700.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G333200.1	Wheat	nucleus	88.93	91.1
HORVU6Hr1G080620.6	Barley	nucleus	86.37	82.71
Os02t0767000-01	Rice	nucleus	70.02	81.07
KXG31173	Sorghum	nucleus	74.79	75.17
Zm00001d052157_P006	Maize	plastid	73.42	74.7
TraesCS6D01G312000.1	Wheat	nucleus, plastid	86.37	71.21
Zm00001d018179_P015	Maize	nucleus	69.34	64.5
GSMUA_Achr8P23340_001	Banana	plastid	40.03	57.74
GSMUA_Achr5P05710_001	Banana	plastid	38.84	55.88
GSMUA_Achr3P07010_001	Banana	nucleus	44.97	46.15
VIT_07s0031g00610.t01	Wine grape	plastid	31.18	45.52
KRH66111	Soybean	nucleus	14.82	43.72
VIT_18s0001g10420.t01	Wine grape	nucleus	39.35	40.53
KRH52008	Soybean	mitochondrion	32.37	39.83
Solyc02g090900.2.1	Tomato	plastid	25.38	39.52
KRH77003	Soybean	nucleus, plastid	27.6	39.42
PGSC0003DMT400010346	Potato	plastid	25.04	38.89
PGSC0003DMT400065490	Potato	nucleus	25.21	38.54
Solyc02g064990.2.1	Tomato	nucleus	25.38	38.5
KRH28469	Soybean	nucleus, plastid	26.58	38.24
KRH04616	Soybean	nucleus	26.58	38.05
KRH57952	Soybean	nucleus	26.41	37.44
KRH15372	Soybean	nucleus	38.67	37.15
PGSC0003DMT400020667	Potato	nucleus	36.46	36.96
Solyc04g078810.2.1	Tomato	nucleus	36.29	36.85
KRH05674	Soybean	nucleus	37.82	36.45
PGSC0003DMT400020663	Potato	nucleus	31.01	35.48
Bra017801.1-P	Field mustard	plastid	22.83	35.45
CDY17058	Canola	nucleus, plastid	30.83	35.15
Bra014045.1-P	Field mustard	nucleus, plastid	30.83	35.15
CDY42723	Canola	nucleus, plastid	23.34	34.51
CDY43217	Canola	nucleus	30.32	34.5
TraesCS5B01G235500.1	Wheat	nucleus	35.95	34.31
CDX69276	Canola	nucleus, plastid	24.53	34.04
AT4G36970.1	Thale cress	plastid	24.53	33.72
AT1G45207.2	Thale cress	nucleus, plastid	31.69	33.51
Bra011737.1-P	Field mustard	nucleus, plastid	24.19	33.33
CDX75626	Canola	nucleus, plastid	24.02	33.02
CDY67768	Canola	plastid	14.14	29.96

Protein Annotations

EnsemblPlants:TraesCS6B01G363600.1	EnsemblPlantsGene:TraesCS6B01G363600	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6B:+:634611543..634615451

Molecular Weight (calculated)

63004.9 Da

IEP (calculated)

10.050

GRAVY (calculated)

-0.759

Length

587 amino acids

Sequence
(BLAST)

001: MPRAAPGLGF PAAAADPAPE RRHPPSSRRK KPPPRRRRPA PPTPPAPPEG PRGAADPDPG LLHPRGGSHA SRATAPRGED GDDDEDEGGY DAAGLEEAAA
101: GDSFSHSLKA ECQKQLQRRA EARPPAPAHE LGNGDAFGGI ELLVLSPRCL LGAAVGGMSK SSTASSRSRS GTFPSPGTPN YNRHCAGNMQ YPKGWSSERV
201: PLGAGANRRY GGSGVVLPFN NGRKLPSKWE DAEKWILSPV SCDGMGRMSA PAPHHRRPKS KSGPLGHPAG VPGAYASVSP MIPCFDGVLA AANFAAHSPF
301: SAGVLMPGHA RNGDFSSGRA RSGDDGSSRS YSAEKEPYIW RSASTHAWTE TLMEASAFAH ISEEAAQDDV LQGQQGATPV ISSPIIKKDV ATQMSPDDSI
401: ISSSPKARHS CSSLPSGHAI RESNSHTPKV EVRDVQVDDQ VTVTRWSKRH VTRGSDKRST NIVEWRKKTT EARAPSFDEK ERERCISKCK REEAKITAWE
501: NLQKAKAEAA IRKLEMKLEK KRSSSMDRIL GKLRSAQKKA QGMRTTVSVS EDQCAVSEDQ CAVRATKKAS LRRTSKPFSC CFTYHAC

Best Arabidopsis Sequence Match ( AT1G45207.2 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.