Factsheet for VIT_18s0001g10420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078810.2.1	Tomato	nucleus	65.96	65.05
PGSC0003DMT400020667	Potato	nucleus	65.44	64.42
PGSC0003DMT400020663	Potato	nucleus	57.02	63.35
KRH15372	Soybean	nucleus	65.26	60.88
KRH05674	Soybean	nucleus	64.56	60.43
KRH52008	Soybean	mitochondrion	48.07	57.44
VIT_07s0031g00610.t01	Wine grape	plastid	39.65	56.22
GSMUA_Achr8P23340_001	Banana	plastid	39.3	55.04
GSMUA_Achr5P05710_001	Banana	plastid	39.12	54.66
Bra014045.1-P	Field mustard	nucleus, plastid	48.95	54.17
CDY17058	Canola	nucleus, plastid	48.95	54.17
CDY43217	Canola	nucleus	48.6	53.68
AT1G45207.2	Thale cress	nucleus, plastid	50.35	51.71
Zm00001d020387_P001	Maize	nucleus, plastid	7.54	50.59
Zm00001d019245_P001	Maize	nucleus	7.54	50.59
Zm00001d017576_P001	Maize	nucleus, plastid	7.54	50.59
Zm00001d039978_P001	Maize	nucleus, plastid	7.37	49.41
GSMUA_Achr3P07010_001	Banana	nucleus	44.91	44.76
Os02t0767000-01	Rice	nucleus	38.77	43.59
Zm00001d005881_P002	Maize	nucleus	28.07	42.78
TraesCS6A01G333200.1	Wheat	nucleus	40.88	40.66
KXG31173	Sorghum	nucleus	41.05	40.07
TraesCS6B01G363600.1	Wheat	nucleus	40.53	39.35
Zm00001d052157_P006	Maize	plastid	39.82	39.34
Zm00001d010608_P001	Maize	nucleus	11.05	39.13
HORVU6Hr1G080620.6	Barley	nucleus	40.0	37.19
KXG35763	Sorghum	nucleus	40.0	36.83
Os09t0456100-01	Rice	nucleus	39.47	36.29
TraesCS5B01G235500.1	Wheat	nucleus	38.77	35.94
HORVU5Hr1G068200.5	Barley	nucleus	38.77	35.94
Os08t0471800-01	Rice	nucleus	37.72	35.71
Zm00001d018179_P015	Maize	nucleus	39.47	35.66
Zm00001d020708_P001	Maize	cytosol	38.25	35.45
TraesCS5A01G237300.2	Wheat	nucleus	38.6	35.37
TraesCS5D01G244300.2	Wheat	nucleus	38.07	35.28
Zm00001d020329_P001	Maize	plastid	10.88	33.33
TraesCS6D01G312000.1	Wheat	nucleus, plastid	39.47	31.6
KXG25311	Sorghum	nucleus	34.21	31.45
Zm00001d050017_P001	Maize	nucleus	34.91	29.66

Protein Annotations

EntrezGene:100257562	wikigene:100257562	MapMan:35.2	ProteinID:CBI19509	ProteinID:CBI19509.3	ncoils:Coil
UniProt:E0CPU6	EMBL:FN595227	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
EntrezGene:LOC100257562	wikigene:LOC100257562	PFAM:PF03763	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13	InterPro:Remorin_C
UniParc:UPI00015C79E8	ArrayExpress:VIT_18s0001g10420	EnsemblPlantsGene:VIT_18s0001g10420	EnsemblPlants:VIT_18s0001g10420.t01	RefSeq:XP_002282806	RefSeq:XP_002282806.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:8738657..8742739

Molecular Weight (calculated)

62408.6 Da

IEP (calculated)

10.362

GRAVY (calculated)

-0.653

Length

570 amino acids

Sequence
(BLAST)

001: MAELGFQDQS LLRFGLGARD ASPDSVIFTQ ESNFSLFSSA SASVDRCSFA SDVHDHDSLA SEVSLHLAGH DLQETSSGPD LIPNKATVHK HSRLIRKEEK
101: AKVLKEDKQV EAEEENLVLD SARNSFSLAL KECQDRRSRS EALSKKHDRR RPASLDLNNA TSSSPRLGGM KKSSASSRRS GTFPSPGTPN YRHSNFGIQK
201: GWSSERVPSH TNVNRRHVSA ALLPFNNGRT LPSKWEDAER WIFSPVAGDG VVKPSFPPPQ RRPKSKSGPL GPPGIAYYSL YSPAIPMFEG GNAGNFMAGS
301: PFSAGVIAPD GLAIHCGGRG GVMPVRTEPC MGRSASVHGC SELLNQSSLR DSRDEKFDGV KDAATDISRT VSRRDIATQM SPEGSIFSSP ERKPSFSPSS
401: PTVLPIVELQ SVNSSKLEIR DVQVDERVTM TRWSKKHRGR IPGKGSENVD GWKKKAVEAH SSAWEVSETA KSISKVKREE AKITAWENLQ KAKAEAAIRK
501: LEMKLEKKRS SSMDKIMNKL RSAQRKAQEM RSSVLANHAH QVSGNAHKAV SFCKTRQMSS LSGCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.