Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008330_P001 | |
| Zm00001d040291_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | Zm00001d008330_P001 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | Zm00001d040291_P001 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020387_P001 | Maize | nucleus, plastid | 98.82 | 98.82 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 98.82 | 98.82 |
| Zm00001d019245_P001 | Maize | nucleus | 97.65 | 97.65 |
| Zm00001d010608_P001 | Maize | nucleus | 98.82 | 52.17 |
| Zm00001d020329_P001 | Maize | plastid | 97.65 | 44.62 |
| Zm00001d005881_P002 | Maize | nucleus | 54.12 | 12.3 |
| Zm00001d050017_P001 | Maize | nucleus | 91.76 | 11.62 |
| KXG25311 | Sorghum | nucleus | 84.71 | 11.61 |
| Os08t0471800-01 | Rice | nucleus | 74.12 | 10.47 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 43.53 | 9.2 |
| Bra017801.1-P | Field mustard | plastid | 37.65 | 8.47 |
| Zm00001d020708_P001 | Maize | cytosol | 61.18 | 8.46 |
| PGSC0003DMT400065490 | Potato | nucleus | 37.65 | 8.33 |
| KRH04616 | Soybean | nucleus | 40.0 | 8.29 |
| Solyc02g064990.2.1 | Tomato | nucleus | 37.65 | 8.27 |
| CDY42723 | Canola | nucleus, plastid | 37.65 | 8.06 |
| KRH52008 | Soybean | mitochondrion | 44.71 | 7.97 |
| CDX69276 | Canola | nucleus, plastid | 38.82 | 7.8 |
| KRH57952 | Soybean | nucleus | 37.65 | 7.73 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 37.65 | 7.51 |
| Solyc02g090900.2.1 | Tomato | plastid | 32.94 | 7.43 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 49.41 | 7.37 |
| PGSC0003DMT400010346 | Potato | plastid | 31.76 | 7.14 |
| KRH77003 | Soybean | nucleus, plastid | 34.12 | 7.06 |
| CDX75626 | Canola | nucleus, plastid | 34.12 | 6.79 |
| KRH15372 | Soybean | nucleus | 48.24 | 6.71 |
| CDY17058 | Canola | nucleus, plastid | 40.0 | 6.6 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 40.0 | 6.6 |
| CDY43217 | Canola | nucleus | 40.0 | 6.59 |
| AT4G36970.1 | Thale cress | plastid | 32.94 | 6.56 |
| Solyc04g078810.2.1 | Tomato | nucleus | 43.53 | 6.4 |
| PGSC0003DMT400020667 | Potato | nucleus | 43.53 | 6.39 |
| KRH28469 | Soybean | nucleus, plastid | 30.59 | 6.37 |
| KRH05674 | Soybean | nucleus | 44.71 | 6.24 |
| Zm00001d052157_P006 | Maize | plastid | 40.0 | 5.89 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 37.65 | 5.77 |
| KRH66111 | Soybean | nucleus | 12.94 | 5.53 |
| Zm00001d018179_P015 | Maize | nucleus | 34.12 | 4.6 |
| PGSC0003DMT400020663 | Potato | nucleus | 14.12 | 2.34 |
| CDY67768 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d039978_P001 | EnsemblPlants:Zm00001d039978_T001 | EnsemblPlantsGene:Zm00001d039978 | InterPro:Remorin_C | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF37 |
| PFAM:PF03763 | ProteinID:ONM30253.1 | UniParc:UPI0002213278 | UniProt:A0A1D6MM15 | MapMan:35.2 | : |
Description
Remorin family protein
Coordinates
chr3:-:21466749..21467524
Molecular Weight (calculated)
9690.7 Da
IEP (calculated)
11.434
GRAVY (calculated)
-0.699
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MTVWENMHKA EAAIQKLVIK LEKKRPYSLE RIFNTLRSGS RKTQVVRSTS TANQNQHISR TIKTAPNLSK NGQMSSLSGC FRQDL
001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.