Factsheet for Zm00001d018179_P015

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008330_P001
Zm00001d040291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT4G36970.1	Zm00001d040291_P001	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31173	Sorghum	nucleus	79.56	85.96
Zm00001d052157_P006	Maize	plastid	76.55	83.71
Os02t0767000-01	Rice	nucleus	61.33	76.33
TraesCS6A01G333200.1	Wheat	nucleus	63.71	70.16
TraesCS6B01G363600.1	Wheat	nucleus	64.5	69.34
HORVU6Hr1G080620.6	Barley	nucleus	63.07	64.93
GSMUA_Achr8P23340_001	Banana	plastid	36.29	56.27
GSMUA_Achr5P05710_001	Banana	plastid	35.82	55.39
TraesCS6D01G312000.1	Wheat	nucleus, plastid	60.7	53.79
GSMUA_Achr3P07010_001	Banana	nucleus	40.57	44.76
VIT_07s0031g00610.t01	Wine grape	plastid	27.73	43.53
KRH66111	Soybean	nucleus	13.47	42.71
VIT_18s0001g10420.t01	Wine grape	nucleus	35.66	39.47
PGSC0003DMT400010346	Potato	plastid	23.61	39.42
KRH52008	Soybean	mitochondrion	29.48	38.99
Solyc02g090900.2.1	Tomato	plastid	23.3	38.99
Solyc02g064990.2.1	Tomato	nucleus	23.3	37.98
Zm00001d005881_P002	Maize	nucleus	22.5	37.97
PGSC0003DMT400065490	Potato	nucleus	22.98	37.76
KRH77003	Soybean	nucleus, plastid	24.25	37.23
KRH04616	Soybean	nucleus	23.93	36.83
KRH28469	Soybean	nucleus, plastid	23.61	36.52
KRH57952	Soybean	nucleus	23.93	36.47
Solyc04g078810.2.1	Tomato	nucleus	33.28	36.33
PGSC0003DMT400020667	Potato	nucleus	33.12	36.1
KRH15372	Soybean	nucleus	34.87	36.01
Zm00001d017576_P001	Maize	nucleus, plastid	4.75	35.29
Zm00001d020387_P001	Maize	nucleus, plastid	4.75	35.29
KRH05674	Soybean	nucleus	33.91	35.14
PGSC0003DMT400020663	Potato	nucleus	28.53	35.09
Bra017801.1-P	Field mustard	plastid	20.44	34.13
Zm00001d019245_P001	Maize	nucleus	4.6	34.12
Zm00001d039978_P001	Maize	nucleus, plastid	4.6	34.12
Zm00001d020708_P001	Maize	cytosol	32.65	33.5
CDY42723	Canola	nucleus, plastid	20.92	33.25
AT4G36970.1	Thale cress	plastid	22.35	33.02
CDY17058	Canola	nucleus, plastid	26.94	33.01
CDX69276	Canola	nucleus, plastid	22.03	32.86
Bra014045.1-P	Field mustard	nucleus, plastid	26.78	32.82
Bra011737.1-P	Field mustard	nucleus, plastid	22.03	32.63
CDY43217	Canola	nucleus	26.31	32.17
AT1G45207.2	Thale cress	nucleus, plastid	28.21	32.07
CDX75626	Canola	nucleus, plastid	21.55	31.85
CDY67768	Canola	plastid	12.84	29.24
Zm00001d010608_P001	Maize	nucleus	7.45	29.19
Zm00001d050017_P001	Maize	nucleus	27.42	25.78
Zm00001d020329_P001	Maize	plastid	7.29	24.73

Protein Annotations

EnsemblPlants:Zm00001d018179_P015	EnsemblPlants:Zm00001d018179_T015	EnsemblPlantsGene:Zm00001d018179	EntrezGene:100277761	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF13	PFAM:PF03763	ProteinID:AQK75196.1	ProteinID:AQK75201.1	SEG:seg
UniParc:UPI0008431336	UniProt:A0A1D6HL97	MapMan:35.2	:	:	:

Description

Remorin family protein

Coordinates

chr5:-:215873827..215878782

Molecular Weight (calculated)

68524.1 Da

IEP (calculated)

10.402

GRAVY (calculated)

-0.643

Length

631 amino acids

Sequence
(BLAST)

001: MLRPEPALGF PAAGPARAPE RRRKKQPPTR RRRPAGATTV GLGPRGAADP DPAHSSALLP LTSGGSGSGF ASRGTVAPDE EEGRDGASSA ESQEVAEAAN
101: DSFSYSLREC QKQRRLKSER SALVRPPASH KLNNAGGIEL LVLSPRCLIG GNPGGMSKSS TTSSRSRSGT GTFPSPGTPS CNRHCAGSMQ YSKGWSSERV
201: PLGTGRNRRY GGSGVVLPFN NGRKLPSKWE DAEKWILSPV SCDGLGRMSA PAPHHRRPKS KSGPLGHPAG IPGAYAAVSP LVPCFDGVLA AANFAAHSPF
301: SAGVLIPEHG RIGDFSSGRD RCGDDGSSRS YSAEKESYIL RSASIHAWTE TLMEASAFAN ISEETVQDDK LQRQTEATSM ISSPIIKKDI GTQMSPEDSI
401: SSPKARHSCS SLPSGHLIKE ANSHIPKPEI RDVQVDDQVT VTRWSKRHVT RGSDKRSTNI IEWRKKTTET RTPSFDEKER ERCMSHFQYS KLSLSCIMFI
501: KKVLLRNLHN LKSGSDGRTL TEDINLLHFV FRDLVICVLR CKREEAKITA WENLQKAKAE AAIRKLEMKL EKKRSSSMDK ILGKLRSAQK KAQDMRSVVS
601: SSEVSNARSG YLSQDLFSGN SYGREGKSVG F

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.