Factsheet for GSMUA_Achr5P05710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr8P30040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	GSMUA_Achr11P...	AT4G15930.1	21798944
AT4G36970.1	GSMUA_Achr8P30040_001	AT4G15930.1	21798944
AT4G36970.1	GSMUA_AchrUn_...	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23340_001	Banana	plastid	75.0	75.18
GSMUA_Achr3P07010_001	Banana	nucleus	74.26	52.97
VIT_07s0031g00610.t01	Wine grape	plastid	50.0	50.75
PGSC0003DMT400010346	Potato	plastid	41.91	45.24
Os02t0767000-01	Rice	nucleus	55.64	44.77
Solyc02g090900.2.1	Tomato	plastid	40.44	43.77
KRH52008	Soybean	mitochondrion	48.53	41.51
PGSC0003DMT400065490	Potato	nucleus	38.73	41.15
KRH77003	Soybean	nucleus, plastid	41.18	40.88
Solyc02g064990.2.1	Tomato	nucleus	38.73	40.83
KXG31173	Sorghum	nucleus	57.84	40.41
Zm00001d052157_P006	Maize	plastid	56.37	39.86
KRH28469	Soybean	nucleus, plastid	39.46	39.46
TraesCS6A01G333200.1	Wheat	nucleus	55.39	39.44
KRH57952	Soybean	nucleus	39.71	39.13
VIT_18s0001g10420.t01	Wine grape	nucleus	54.66	39.12
TraesCS6B01G363600.1	Wheat	nucleus	55.88	38.84
KRH04616	Soybean	nucleus	37.5	37.32
HORVU6Hr1G080620.6	Barley	nucleus	55.88	37.19
Zm00001d018179_P015	Maize	nucleus	55.39	35.82
PGSC0003DMT400020667	Potato	nucleus	50.49	35.58
Solyc04g078810.2.1	Tomato	nucleus	50.25	35.47
Bra011737.1-P	Field mustard	nucleus, plastid	36.27	34.74
KRH15372	Soybean	nucleus	51.96	34.7
KRH05674	Soybean	nucleus	51.23	34.32
AT4G36970.1	Thale cress	plastid	35.54	33.96
Bra017801.1-P	Field mustard	plastid	31.13	33.6
CDY42723	Canola	nucleus, plastid	32.6	33.5
CDX75626	Canola	nucleus, plastid	34.8	33.26
PGSC0003DMT400020663	Potato	nucleus	41.67	33.14
KRH66111	Soybean	nucleus	15.93	32.66
CDX69276	Canola	nucleus, plastid	33.82	32.62
TraesCS6D01G312000.1	Wheat	nucleus, plastid	55.15	31.6
CDY17058	Canola	nucleus, plastid	38.73	30.68
Bra014045.1-P	Field mustard	nucleus, plastid	38.73	30.68
CDY43217	Canola	nucleus	38.48	30.43
AT1G45207.2	Thale cress	nucleus, plastid	40.44	29.73
CDY67768	Canola	plastid	19.61	28.88

Protein Annotations

EnsemblPlants:GSMUA_Achr5P05710_001	EnsemblPlants:GSMUA_Achr5T05710_001	EnsemblPlantsGene:GSMUA_Achr5G05710_001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF13	PFAM:PF03763	SEG:seg	UniParc:UPI000294E654	UniProt:M0SW00	MapMan:35.2

Description

remorin C-terminal domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05710_001]

Coordinates

chr5:+:4238390..4241693

Molecular Weight (calculated)

44450.4 Da

IEP (calculated)

10.523

GRAVY (calculated)

-0.686

Length

408 amino acids

Sequence
(BLAST)

001: MKKSSATSSR SRSGTFPSPG TPNYRHGAGA AAYQKGWSSE RVPLPAHNNR RYGGSGMLLP FANGRALPSK WEDAERWIFS PVSGDGVGRS PMPPSQHRRP
101: KSKSGPLGAP AGVSGTYSLA SPLVPCFDSG RVGNFAANSP FLAGVLIPER VGGVSAMGGN NSGNGEPYIV RSASIHGWSD TLIESSSSVP SSQDEKIDGT
201: IEAASTVSTS ILRKDVATQM SPEGSTPSSP KEGPFSSSPA SVPPIEEVER HFSKIEIRDV EVDDRVTMTR WSKKHIARDS DRHPTSIIEW KKRTAEENTD
301: AWVVAETTRS ISKHKREEAK ITAWENLQKA KADAEIRKLE MKLEKKRSSS MEKIINKLRL AQKKAQEMRN AVTPSQVNQV PKTARKCQYF RKRGQISSLS
401: GCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.