Factsheet for GSMUA_Achr8P30040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P18890_001
GSMUA_Achr4P03430_001
GSMUA_Achr4P10960_001
GSMUA_Achr4P14130_001
GSMUA_Achr5P16030_001
GSMUA_Achr6P07710_001
GSMUA_Achr6P16600_001
GSMUA_Achr7P26200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	GSMUA_Achr10P...	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr3P18890_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P03430_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P10960_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P14130_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr5P16030_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr6P07710_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr7P26200_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr6P16600_001	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	97.4	97.4
Bra012751.1-P	Field mustard	cytosol	72.73	72.73
VIT_05s0077g02110.t01	Wine grape	cytosol	77.92	51.28
Solyc01g066590.2.1	Tomato	cytosol, extracellular	77.92	50.42
PGSC0003DMT400029467	Potato	extracellular	77.92	50.42
CDY57865	Canola	cytosol	79.22	50.0
Zm00001d008330_P001	Maize	mitochondrion	77.92	49.18
KRH37076	Soybean	cytosol	75.32	49.15
CDX90554	Canola	cytosol	76.62	48.76
CDY09728	Canola	cytosol	76.62	48.76
Bra038059.1-P	Field mustard	cytosol	77.92	48.39
CDY24919	Canola	cytosol	77.92	48.39
KRH12076	Soybean	cytosol	75.32	47.54
AT4G15930.1	Thale cress	cytosol	75.32	47.15
Os01t0256400-01	Rice	cytosol, nucleus	79.22	46.92
Zm00001d040291_P001	Maize	cytosol, mitochondrion	77.92	46.88
EES00507	Sorghum	cytosol	77.92	46.15
GSMUA_AchrUn_...	Banana	cytosol	50.65	43.82
TraesCS3D01G180700.1	Wheat	cytosol	76.62	41.84
TraesCS3B01G205000.1	Wheat	cytosol	76.62	41.84
TraesCS3A01G175300.1	Wheat	cytosol	76.62	41.84
KRH12077	Soybean	cytosol	74.03	41.01
KRH37077	Soybean	mitochondrion	75.32	36.94
GSMUA_Achr10P...	Banana	cytosol	41.56	34.41
GSMUA_Achr2P19900_001	Banana	cytosol	41.56	34.41
GSMUA_Achr2P14130_001	Banana	cytosol	48.05	33.95
GSMUA_Achr7P14400_001	Banana	cytosol	40.26	33.33
GSMUA_Achr7P25190_001	Banana	cytosol	38.96	32.26
GSMUA_Achr10P...	Banana	cytosol	40.26	30.39
OQU83188	Sorghum	plastid	46.75	28.57
GSMUA_Achr9P29930_001	Banana	cytosol	41.56	28.57
GSMUA_Achr1P20660_001	Banana	cytosol	46.75	26.47
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	45.45	25.36
GSMUA_Achr7P12500_001	Banana	cytosol	44.16	23.45
GSMUA_Achr9P27210_001	Banana	nucleus	44.16	22.37
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	37.66	20.57
KRH40946	Soybean	plastid	16.88	11.21

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	InterPro:DLC_sf	InterPro:Dynein_light_1/2_CS	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0005875	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016787	GO:GO:0030286	EnsemblPlantsGene:GSMUA_Achr8G30040_001	EnsemblPlants:GSMUA_Achr8P30040_001	EnsemblPlants:GSMUA_Achr8T30040_001	InterPro:IPR037177
UniProt:M0TUV6	PFAM:PF01221	ScanProsite:PS01239	PANTHER:PTHR11886	SMART:SM01375	SUPFAM:SSF54648
UniParc:UPI000295E843	:	:	:	:	:

Description

Dynein light chain 1, cytoplasmic [Source:GMGC_GENE;Acc:GSMUA_Achr8G30040_001]

Coordinates

chr8:-:32242555..32246646

Molecular Weight (calculated)

9141.9 Da

IEP (calculated)

8.691

GRAVY (calculated)

-0.601

Length

77 amino acids

Sequence
(BLAST)

1: MSEKMRNDAI DCARAAFEKH RLEKEIAEYI KKEFDKKYGQ TWHCIVGRNF GSYVTHETNH FLYFYVDSKA VLLFKSG

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.