CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012751.1-P	Field mustard	cytosol	63.64	100.0
CDX90554	Canola	cytosol	97.52	97.52
CDY57865	Canola	cytosol	88.43	87.7
CDY24919	Canola	cytosol	87.6	85.48
GSMUA_Achr8P30040_001	Banana	cytosol	48.76	76.62
GSMUA_Achr11P...	Banana	cytosol	47.93	75.32
VIT_05s0077g02110.t01	Wine grape	cytosol	68.59	70.94
Solyc01g066590.2.1	Tomato	cytosol, extracellular	64.46	65.55
PGSC0003DMT400029467	Potato	extracellular	64.46	65.55
EES00507	Sorghum	cytosol	64.46	60.0
Zm00001d008330_P001	Maize	mitochondrion	59.5	59.02
Zm00001d040291_P001	Maize	cytosol, mitochondrion	61.98	58.59
Os01t0256400-01	Rice	cytosol, nucleus	62.81	58.46
TraesCS3B01G205000.1	Wheat	cytosol	61.98	53.19
TraesCS3A01G175300.1	Wheat	cytosol	61.98	53.19
TraesCS3D01G180700.1	Wheat	cytosol	61.98	53.19
OQU83188	Sorghum	plastid	44.63	42.86
GSMUA_AchrUn_...	Banana	cytosol	29.75	40.45
CDY02551	Canola	cytosol	28.1	36.17
CDY30135	Canola	cytosol	27.27	35.48
CDX97722	Canola	cytosol	27.27	35.48
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	38.02	33.33
CDY29301	Canola	cytosol	27.27	32.67
CDX89255	Canola	cytosol	27.27	32.67
CDY21425	Canola	cytosol	31.41	29.23
CDY04736	Canola	cytosol	31.41	29.23
CDY41457	Canola	cytosol	29.75	27.69
CDX91705	Canola	cytosol	29.75	27.69
CDY25775	Canola	cytosol	29.75	26.28
CDY12479	Canola	cytosol	29.75	26.28
CDY47528	Canola	cytosol	27.27	25.38
CDY45106	Canola	nucleus	38.02	21.9
CDX88858	Canola	nucleus, plastid	37.19	21.53
CDX70914	Canola	nucleus	37.19	21.33
KRH40946	Soybean	plastid	9.92	10.34

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	GO:A0A078FCF9	UniProt:A0A078FCF9	EnsemblPlants:CDY09728	ProteinID:CDY09728
ProteinID:CDY09728.1	InterPro:DLC_sf	InterPro:Dynein_light_1/2_CS	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0005875	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0030286	EnsemblPlantsGene:GSBRNA2T00031406001	InterPro:IPR037177	PFAM:PF01221	ScanProsite:PS01239	PANTHER:PTHR11886
SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0004EF343A	:	:	:

Description

BnaC07g33330DBnaC07g33330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCF9]

Coordinates

chrLK031998:-:662871..664112

Molecular Weight (calculated)

13633.1 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.679

Length

121 amino acids

Sequence
(BLAST)

001: MSEGRRKKSV NGGGAPAQTN HDDRRSTLPE AEAAGKRAVI KSADMKEDMQ KEAIEIAITA FEKYSVEKEI AENIKKEFDK VHGPTWHCIV GRNFGSYVTH
101: ETNHFVYFYL DQKAVLLFKS G

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.