Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006541.1-P | Field mustard | nucleus | 97.16 | 98.09 |
| CDX88858 | Canola | nucleus, plastid | 96.68 | 97.61 |
| CDY45106 | Canola | nucleus | 87.68 | 88.1 |
| AT5G20110.1 | Thale cress | cytosol | 81.52 | 82.3 |
| KRH40947 | Soybean | cytosol | 19.43 | 80.39 |
| VIT_11s0016g05000.t01 | Wine grape | cytosol, nucleus, plastid | 43.6 | 50.83 |
| CDX97722 | Canola | cytosol | 19.43 | 44.09 |
| CDY30135 | Canola | cytosol | 19.43 | 44.09 |
| CDY02551 | Canola | cytosol | 19.43 | 43.62 |
| CDY04736 | Canola | cytosol | 26.54 | 43.08 |
| CDY21425 | Canola | cytosol | 26.54 | 43.08 |
| Solyc12g006630.1.1 | Tomato | cytosol | 45.5 | 42.86 |
| CDX91705 | Canola | cytosol | 26.07 | 42.31 |
| CDY41457 | Canola | cytosol | 25.59 | 41.54 |
| KRH20287 | Soybean | cytosol | 47.39 | 40.98 |
| KRH03712 | Soybean | cytosol | 47.39 | 40.82 |
| PGSC0003DMT400053284 | Potato | cytosol | 44.55 | 40.69 |
| CDY29301 | Canola | cytosol | 19.43 | 40.59 |
| CDX89255 | Canola | cytosol | 19.43 | 40.59 |
| CDY25775 | Canola | cytosol | 26.07 | 40.15 |
| CDY12479 | Canola | cytosol | 26.07 | 40.15 |
| CDX90554 | Canola | cytosol | 21.33 | 37.19 |
| CDY09728 | Canola | cytosol | 21.33 | 37.19 |
| CDY57865 | Canola | cytosol | 20.85 | 36.07 |
| CDY24919 | Canola | cytosol | 20.85 | 35.48 |
| KRH33092 | Soybean | plastid | 23.22 | 32.89 |
| CDY47528 | Canola | cytosol | 17.54 | 28.46 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.2 | GO:A0A078C3Y5 | EnsemblPlants:CDX70914 | ProteinID:CDX70914 | ProteinID:CDX70914.1 |
| InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | EnsemblPlantsGene:GSBRNA2T00140822001 | InterPro:IPR037177 |
| PFAM:PF01221 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF51 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI0004EF40FC |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g09980D
Coordinates
chrLK031791:-:2681975..2683954
Molecular Weight (calculated)
23523.3 Da
IEP (calculated)
10.407
GRAVY (calculated)
-0.514
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMANEEKPK KKKSLMNFYK FSTTTSKQSL INPKSTPNKV QIPPSSLYQE EVSKSIVVQS SKTQNHLRRD IFELKTTSNE RKKGGGGGGG AAEEGRKSVS
101: HVERDTEARI AAAAEMLTVR ILAADMPGFM QAHAFRCART TLDSLEKFSS KHMAFNLKKE FDKGYGPAWH CIVGSSFGSF VTHSTGCFIY FSMDKLYILL
201: FKTKVRPASP H
101: HVERDTEARI AAAAEMLTVR ILAADMPGFM QAHAFRCART TLDSLEKFSS KHMAFNLKKE FDKGYGPAWH CIVGSSFGSF VTHSTGCFIY FSMDKLYILL
201: FKTKVRPASP H
001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
Arabidopsis Description
At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.