Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G15930.1 | CDX74298 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | CDX91947 | AT3G01400.1 | 21798944 |
| AT4G15930.1 | CDX70544 | AT5G14140.1 | 21798944 |
| AT4G15930.1 | CDX78562 | AT5G14140.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038059.1-P | Field mustard | cytosol | 99.18 | 97.58 |
| CDY24919 | Canola | cytosol | 99.18 | 97.58 |
| CDY09728 | Canola | cytosol | 87.7 | 88.43 |
| CDX90554 | Canola | cytosol | 86.89 | 87.6 |
| AT4G15930.1 | Thale cress | cytosol | 86.07 | 85.37 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 50.0 | 79.22 |
| GSMUA_Achr11P... | Banana | cytosol | 50.0 | 79.22 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 68.85 | 71.79 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 64.75 | 66.39 |
| PGSC0003DMT400029467 | Potato | extracellular | 64.75 | 66.39 |
| Os01t0256400-01 | Rice | cytosol, nucleus | 62.3 | 58.46 |
| Zm00001d008330_P001 | Maize | mitochondrion | 57.38 | 57.38 |
| EES00507 | Sorghum | cytosol | 59.84 | 56.15 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 58.2 | 55.47 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 60.66 | 52.48 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 60.66 | 52.48 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 60.66 | 52.48 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.33 | 41.57 |
| OQU83188 | Sorghum | plastid | 40.98 | 39.68 |
| CDY02551 | Canola | cytosol | 27.87 | 36.17 |
| CDY30135 | Canola | cytosol | 27.05 | 35.48 |
| CDX97722 | Canola | cytosol | 27.05 | 35.48 |
| CDY29301 | Canola | cytosol | 27.87 | 33.66 |
| CDX89255 | Canola | cytosol | 27.87 | 33.66 |
| Os06t0492700-00 | Rice | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 36.89 | 32.61 |
| CDY04736 | Canola | cytosol | 29.51 | 27.69 |
| CDY21425 | Canola | cytosol | 29.51 | 27.69 |
| CDX91705 | Canola | cytosol | 28.69 | 26.92 |
| CDY41457 | Canola | cytosol | 28.69 | 26.92 |
| CDY12479 | Canola | cytosol | 28.69 | 25.55 |
| CDY25775 | Canola | cytosol | 28.69 | 25.55 |
| CDY47528 | Canola | cytosol | 27.05 | 25.38 |
| CDX88858 | Canola | nucleus, plastid | 36.07 | 21.05 |
| CDY45106 | Canola | nucleus | 36.07 | 20.95 |
| CDX70914 | Canola | nucleus | 36.07 | 20.85 |
| KRH40946 | Soybean | plastid | 10.66 | 11.21 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | GO:A0A078J4Y1 | UniProt:A0A078J4Y1 | EnsemblPlants:CDY57865 | ProteinID:CDY57865 |
| ProteinID:CDY57865.1 | InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0005875 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0030286 | EnsemblPlantsGene:GSBRNA2T00022770001 | InterPro:IPR037177 | PFAM:PF01221 | ScanProsite:PS01239 | PANTHER:PTHR11886 |
| SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI0004EB3430 | : | : | : |
Description
BnaC08g47800DBnaC08g47800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Y1]
Coordinates
chrLK033611:-:47490..48991
Molecular Weight (calculated)
13595.0 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.684
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGRIKKSV NGGAPAQTNP DDRRSSVEAS SQGAGKQRAV IKSADMKEDM QKEAIDIAIT AFEKNSVEKE IAENIKKEFD KKHGATWHCI VGRNFGSYVT
101: HETNHFVYFY LDQKAVLLFK SG
101: HETNHFVYFY LDQKAVLLFK SG
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.