CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006541.1-P	Field mustard	nucleus	99.52	99.52
CDX70914	Canola	nucleus	97.61	96.68
CDY45106	Canola	nucleus	85.65	85.24
AT5G20110.1	Thale cress	cytosol	80.86	80.86
KRH40947	Soybean	cytosol	19.62	80.39
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	43.54	50.28
CDX97722	Canola	cytosol	19.62	44.09
CDY30135	Canola	cytosol	19.62	44.09
CDY02551	Canola	cytosol	19.62	43.62
CDY04736	Canola	cytosol	26.79	43.08
CDY21425	Canola	cytosol	26.79	43.08
Solyc12g006630.1.1	Tomato	cytosol	45.45	42.41
CDX91705	Canola	cytosol	26.32	42.31
CDY41457	Canola	cytosol	25.84	41.54
CDY29301	Canola	cytosol	19.62	40.59
CDX89255	Canola	cytosol	19.62	40.59
KRH20287	Soybean	cytosol	47.37	40.57
KRH03712	Soybean	cytosol	47.37	40.41
PGSC0003DMT400053284	Potato	cytosol	44.5	40.26
CDY25775	Canola	cytosol	26.32	40.15
CDY12479	Canola	cytosol	26.32	40.15
CDX90554	Canola	cytosol	21.53	37.19
CDY09728	Canola	cytosol	21.53	37.19
CDY57865	Canola	cytosol	21.05	36.07
CDY24919	Canola	cytosol	21.05	35.48
KRH33092	Soybean	plastid	23.45	32.89
CDY47528	Canola	cytosol	17.7	28.46

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	GO:A0A078DNR7	EnsemblPlants:CDX88858	ProteinID:CDX88858	ProteinID:CDX88858.1
InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0030286	EnsemblPlantsGene:GSBRNA2T00148938001	InterPro:IPR037177
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0004EE035E
SEG:seg	:	:	:	:	:

Description

BnaA03g07910D

Coordinates

chrLK031856:+:1308351..1310605

Molecular Weight (calculated)

23396.2 Da

IEP (calculated)

10.456

GRAVY (calculated)

-0.491

Length

209 amino acids

Sequence
(BLAST)

001: MNMANEEKPK KKKSLMNFYK FSTTTSTKSL IKPKSTPNKV QIPPSSVYQE EVSKSIVVQS SKTQNHLRRD IFELKTTSNE RKKGGAGGAA EEGRKSVSHV
101: ERDTEARIAA AAEMLTVRIL AADMPGFMQA HAFRCARTTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYILLFK
201: TKVRPASPH

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.