CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40947	Soybean	cytosol	20.82	100.0
KRH20287	Soybean	cytosol	94.69	95.08
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	28.57	72.92
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	45.71	61.88
KRH33092	Soybean	plastid	30.2	49.66
Solyc12g006630.1.1	Tomato	cytosol	45.31	49.55
CDX70914	Canola	nucleus	40.82	47.39
Bra006541.1-P	Field mustard	nucleus	40.41	47.37
CDX88858	Canola	nucleus, plastid	40.41	47.37
PGSC0003DMT400053284	Potato	cytosol	44.49	47.19
KRH27167	Soybean	cytosol	17.96	46.81
KRH41561	Soybean	cytosol	17.55	46.24
KRH60274	Soybean	cytosol	17.55	46.24
CDY45106	Canola	nucleus	39.59	46.19
AT5G20110.1	Thale cress	cytosol	39.18	45.93
KRH09878	Soybean	cytosol	17.55	45.26
KRH23441	Soybean	cytosol	17.55	45.26
KRH08469	Soybean	cytosol	22.45	42.31
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	18.78	42.2
KRH70126	Soybean	cytosol	22.86	42.11
KRH25852	Soybean	cytosol	9.8	40.68
KRH60372	Soybean	cytosol	22.04	40.6
KRH41675	Soybean	cytosol	22.04	40.6
KRH49195	Soybean	cytosol	17.14	37.5
KRH37076	Soybean	cytosol	17.96	37.29
KRH12076	Soybean	cytosol	17.55	35.25
KRH27230	Soybean	cytosol	20.41	32.89
KRH12077	Soybean	cytosol	17.96	31.65
KRH22104	Soybean	cytosol, plastid	19.59	30.57
KRH03396	Soybean	cytosol	30.2	28.57
KRH56986	Soybean	cytosol	29.8	27.65
KRH37077	Soybean	mitochondrion	17.55	27.39
KRH40946	Soybean	plastid	6.12	12.93

Protein Annotations

EntrezGene:100791759	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02010358	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_17G116000	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868	GO:GO:0006810
GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970
GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271
GO:GO:2000582	InterPro:IPR037177	UniProt:K7ML59	EnsemblPlants:KRH03712	ProteinID:KRH03712	ProteinID:KRH03712.1
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000296838D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:9171575..9173844

Molecular Weight (calculated)

27458.0 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.357

Length

245 amino acids

Sequence
(BLAST)

001: MANQDKQHKR GFMYIYKGGT GNQRKKELEH GVGQEKKSNS RSWLNRISRT RIFNDGHRDL DIGTRGEGEF VEARKSMSCL DLGTPAGGYV EGRKSVSFIE
101: AAASPAAAIG SIVEEGRKSV SHIEKNFAVE GMVEARKSVS HIETLSSVIA YLQVKVLVSD MPTFMQVHAF RCARRTYDSL EKFSAKLIAH NIKKEFDKAY
201: GPVWHCIVGS NFGSFVTHST GCFLYFSMEN LYILLFKTKV KKALD

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.