Factsheet for Solyc12g006630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053284	Potato	cytosol	96.88	93.94
KRH40947	Soybean	cytosol	17.86	78.43
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	33.04	77.08
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	47.77	59.12
CDY45106	Canola	nucleus	44.64	47.62
Bra006541.1-P	Field mustard	nucleus	42.86	45.93
CDX70914	Canola	nucleus	42.86	45.5
CDX88858	Canola	nucleus, plastid	42.41	45.45
KRH03712	Soybean	cytosol	49.55	45.31
KRH20287	Soybean	cytosol	49.11	45.08
AT5G20110.1	Thale cress	cytosol	41.96	44.98
Solyc01g005460.2.1	Tomato	cytosol	25.45	43.85
Solyc12g044240.1.1	Tomato	cytosol	17.86	42.55
Solyc03g120690.2.1	Tomato	cytosol	17.41	41.49
Solyc07g063180.2.1	Tomato	cytosol	23.66	36.05
Solyc07g063610.2.1	Tomato	cytosol	17.86	35.4
KRH33092	Soybean	plastid	23.21	34.9
Solyc01g066590.2.1	Tomato	cytosol, extracellular	17.86	33.61
Solyc03g113540.2.1	Tomato	cytosol, plastid	35.27	30.74
Solyc06g071180.2.1	Tomato	cytosol	34.38	28.62

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005868	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150
GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286
GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	UniProt:K4DBK0
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648	EnsemblPlantsGene:Solyc12g006630.1
EnsemblPlants:Solyc12g006630.1.1	UniParc:UPI000276A94E	:	:	:	:

Description

No Description!

Coordinates

chr12:-:1101151..1105133

Molecular Weight (calculated)

25283.7 Da

IEP (calculated)

10.316

GRAVY (calculated)

-0.426

Length

224 amino acids

Sequence
(BLAST)

001: MATRIVGEKQ NKGSMYVYNL DTGNPKPKPK PEPDLSTMFK KGISKGWPLR RSKTYRENHH QNNNVVITTT KGETTRKSVS SIEGQVIVNK EIELSKNPII
101: ESRKSASCVI GTRKSLTHVE LNVASMAAIL QVKVLVTDMP GFMQVHAFKC ARTTYDSLEK FSSKHMAYNM KKEFDKIYGP AWHCIVGSSF GSYVTHSTGG
201: FLYFSMEKLY ILIFKTKVQK TIES

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.