Factsheet for Solyc06g071180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083122	Potato	cytosol	92.94	91.58
Solyc03g113540.2.1	Tomato	cytosol, plastid	63.57	66.54
VIT_17s0000g05380.t01	Wine grape	cytosol	41.26	60.0
Solyc01g005460.2.1	Tomato	cytosol	23.42	48.46
KRH03396	Soybean	cytosol	43.12	44.79
KRH56986	Soybean	cytosol	42.38	43.18
Solyc07g063180.2.1	Tomato	cytosol	21.56	39.46
Zm00001d009402_P001	Maize	cytosol, mitochondrion	26.02	38.89
Solyc03g120690.2.1	Tomato	cytosol	13.01	37.23
Solyc12g044240.1.1	Tomato	cytosol	13.01	37.23
OQU86998	Sorghum	cytosol, mitochondrion	26.02	37.04
Solyc07g063610.2.1	Tomato	cytosol	15.24	36.28
Solyc01g066590.2.1	Tomato	cytosol, extracellular	15.24	34.45
Solyc12g006630.1.1	Tomato	cytosol	28.62	34.38
Os01t0555600-00	Rice	cytosol	26.77	33.8

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005868	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150
GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286
GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	UniProt:K4C8J1
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF37	SMART:SM01375	SUPFAM:SSF54648	EnsemblPlantsGene:Solyc06g071180.2
EnsemblPlants:Solyc06g071180.2.1	UniParc:UPI0002766F17	:	:	:	:

Description

No Description!

Coordinates

chr6:+:43769476..43771078

Molecular Weight (calculated)

30182.2 Da

IEP (calculated)

10.437

GRAVY (calculated)

-0.543

Length

269 amino acids

Sequence
(BLAST)

001: MAHNNNTHRR ILAAPDHNPK TSISMDPTLK KQPKPTPFTS KSTIHNISNQ FSHLNANHKI LKSGHTSYSL DTHLNPKSWT DSSCSALTKS KSQQGKTEAI
101: IKKVPQRGKE FHKEVDVKRG SVNLSKSQEI EKFKGFDEIK KQSLSVLLKN NGRRKSFCGS KIELTDFFSC SGVKVVSVDM PPFMQVHAVN CARKTHDSLE
201: KFTSKALALT LKKEFDEVYG PAWHCIVGTS FGSFVTHSIG GFMYFSMDHK IYVLLFKTTV QKAESSFKS

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.