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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400049549 Potato cytosol 96.46 90.08
KRH25852 Soybean cytosol 44.25 84.75
KRH27167 Soybean cytosol 69.03 82.98
VIT_19s0014g03710.t01 Wine grape cytosol 76.99 79.82
KRH55664 Soybean cytosol, mitochondrion, peroxisome 74.34 77.06
AT4G27360.1 Thale cress cytosol 65.49 71.84
CDY29301 Canola cytosol 62.83 70.3
CDX89255 Canola cytosol 62.83 70.3
Bra026356.1-P Field mustard cytosol 62.83 70.3
GSMUA_Achr2P14130_001 Banana cytosol 67.26 69.72
GSMUA_Achr9P29930_001 Banana cytosol 64.6 65.18
EER97375 Sorghum cytosol 64.6 64.04
Solyc03g120690.2.1 Tomato cytosol 43.36 52.13
Solyc12g044240.1.1 Tomato cytosol 43.36 52.13
GSMUA_Achr3P22950_001 Banana cytosol, mitochondrion 53.1 42.55
Solyc01g066590.2.1 Tomato cytosol, extracellular 33.63 31.93
Solyc07g063180.2.1 Tomato cytosol 38.94 29.93
Solyc01g005460.2.1 Tomato cytosol 33.63 29.23
Solyc12g006630.1.1 Tomato cytosol 35.4 17.86
Solyc03g113540.2.1 Tomato cytosol, plastid 38.05 16.73
Solyc06g071180.2.1 Tomato cytosol 36.28 15.24
Protein Annotations
Gene3D:3.30.740.10MapMan:35.2InterPro:DLC_sfInterPro:Dynein_light_chain_typ-1/2GO:GO:0003674GO:GO:0003774
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005856GO:GO:0005868GO:GO:0005874GO:GO:0006810GO:GO:0007017
GO:GO:0008092GO:GO:0008150GO:GO:0008574GO:GO:0009987GO:GO:0010970GO:GO:0016043
GO:GO:0016787GO:GO:0030286GO:GO:0045505GO:GO:0051959GO:GO:0060271GO:GO:2000582
InterPro:IPR037177UniProt:K4CH44PFAM:PF01221PANTHER:PTHR11886PANTHER:PTHR11886:SF22SMART:SM01375
SUPFAM:SSF54648EnsemblPlantsGene:Solyc07g063610.2EnsemblPlants:Solyc07g063610.2.1TMHMM:TMhelixUniParc:UPI000276BE53SEG:seg
Description
No Description!
Coordinates
chr7:-:66041903..66043335
Molecular Weight (calculated)
12402.8 Da
IEP (calculated)
4.110
GRAVY (calculated)
0.193
Length
113 amino acids
Sequence
(BLAST)
001: MLEGKAVIGD TDMLGTMQQD ALDLAAKALD FFDVTEATEI ARFLKKEFDT MYGPGWQCIV GTDFGSFVTH CYGCFIHFYI GSLAILLFKG SAALEDPKAE
101: AEADRFSTLQ EIA
Best Arabidopsis Sequence Match ( AT4G27360.1 )
(BLAST)
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.