Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400049549 | Potato | cytosol | 96.46 | 90.08 |
KRH25852 | Soybean | cytosol | 44.25 | 84.75 |
KRH27167 | Soybean | cytosol | 69.03 | 82.98 |
VIT_19s0014g03710.t01 | Wine grape | cytosol | 76.99 | 79.82 |
KRH55664 | Soybean | cytosol, mitochondrion, peroxisome | 74.34 | 77.06 |
AT4G27360.1 | Thale cress | cytosol | 65.49 | 71.84 |
CDY29301 | Canola | cytosol | 62.83 | 70.3 |
CDX89255 | Canola | cytosol | 62.83 | 70.3 |
Bra026356.1-P | Field mustard | cytosol | 62.83 | 70.3 |
GSMUA_Achr2P14130_001 | Banana | cytosol | 67.26 | 69.72 |
GSMUA_Achr9P29930_001 | Banana | cytosol | 64.6 | 65.18 |
EER97375 | Sorghum | cytosol | 64.6 | 64.04 |
Solyc03g120690.2.1 | Tomato | cytosol | 43.36 | 52.13 |
Solyc12g044240.1.1 | Tomato | cytosol | 43.36 | 52.13 |
GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 53.1 | 42.55 |
Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 33.63 | 31.93 |
Solyc07g063180.2.1 | Tomato | cytosol | 38.94 | 29.93 |
Solyc01g005460.2.1 | Tomato | cytosol | 33.63 | 29.23 |
Solyc12g006630.1.1 | Tomato | cytosol | 35.4 | 17.86 |
Solyc03g113540.2.1 | Tomato | cytosol, plastid | 38.05 | 16.73 |
Solyc06g071180.2.1 | Tomato | cytosol | 36.28 | 15.24 |
Protein Annotations
Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005868 | GO:GO:0005874 | GO:GO:0006810 | GO:GO:0007017 |
GO:GO:0008092 | GO:GO:0008150 | GO:GO:0008574 | GO:GO:0009987 | GO:GO:0010970 | GO:GO:0016043 |
GO:GO:0016787 | GO:GO:0030286 | GO:GO:0045505 | GO:GO:0051959 | GO:GO:0060271 | GO:GO:2000582 |
InterPro:IPR037177 | UniProt:K4CH44 | PFAM:PF01221 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF22 | SMART:SM01375 |
SUPFAM:SSF54648 | EnsemblPlantsGene:Solyc07g063610.2 | EnsemblPlants:Solyc07g063610.2.1 | TMHMM:TMhelix | UniParc:UPI000276BE53 | SEG:seg |
Description
No Description!
Coordinates
chr7:-:66041903..66043335
Molecular Weight (calculated)
12402.8 Da
IEP (calculated)
4.110
GRAVY (calculated)
0.193
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVIGD TDMLGTMQQD ALDLAAKALD FFDVTEATEI ARFLKKEFDT MYGPGWQCIV GTDFGSFVTH CYGCFIHFYI GSLAILLFKG SAALEDPKAE
101: AEADRFSTLQ EIA
101: AEADRFSTLQ EIA
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.