CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25852	Soybean	cytosol	56.38	89.83
VIT_19s0014g03710.t01	Wine grape	cytosol	90.43	77.98
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	90.43	77.98
AT4G27360.1	Thale cress	cytosol	77.66	70.87
GSMUA_Achr2P14130_001	Banana	cytosol	80.85	69.72
CDY29301	Canola	cytosol	74.47	69.31
Bra026356.1-P	Field mustard	cytosol	74.47	69.31
CDX89255	Canola	cytosol	74.47	69.31
Solyc07g063610.2.1	Tomato	cytosol	82.98	69.03
PGSC0003DMT400049549	Potato	cytosol	82.98	64.46
GSMUA_Achr9P29930_001	Banana	cytosol	75.53	63.39
EER97375	Sorghum	cytosol	73.4	60.53
KRH40947	Soybean	cytosol	28.72	52.94
KRH09878	Soybean	cytosol	53.19	52.63
KRH60274	Soybean	cytosol	51.06	51.61
KRH41561	Soybean	cytosol	51.06	51.61
KRH23441	Soybean	cytosol	52.13	51.58
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	62.77	41.84
KRH49195	Soybean	cytosol	46.81	39.29
KRH37076	Soybean	cytosol	41.49	33.05
KRH12076	Soybean	cytosol	40.43	31.15
KRH08469	Soybean	cytosol	40.43	29.23
KRH12077	Soybean	cytosol	41.49	28.06
KRH41675	Soybean	cytosol	39.36	27.82
KRH60372	Soybean	cytosol	39.36	27.82
KRH70126	Soybean	cytosol	39.36	27.82
KRH27230	Soybean	cytosol	41.49	25.66
KRH37077	Soybean	mitochondrion	40.43	24.2
KRH22104	Soybean	cytosol, plastid	39.36	23.57
KRH33092	Soybean	plastid	29.79	18.79
KRH03712	Soybean	cytosol	46.81	17.96
KRH20287	Soybean	cytosol	45.74	17.62
KRH03396	Soybean	cytosol	42.55	15.44
KRH56986	Soybean	cytosol	42.55	15.15
KRH40946	Soybean	plastid	12.77	10.34

Protein Annotations

EntrezGene:100778859	Gene3D:3.30.740.10	MapMan:35.1	EMBL:ACUP02007781	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_12G218900	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868
GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177
UniProt:K7LWB5	EnsemblPlants:KRH27167	ProteinID:KRH27167	ProteinID:KRH27167.1	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF22	SMART:SM01375	SUPFAM:SSF54648	TMHMM:TMhelix	UniParc:UPI0002949F0E	:

Description

hypothetical protein

Coordinates

chr12:+:37840473..37841264

Molecular Weight (calculated)

10355.5 Da

IEP (calculated)

4.647

GRAVY (calculated)

0.244

Length

94 amino acids

Sequence
(BLAST)

1: MLEGKAVIGE TDMLQTMQQD ALNLASKALD FFDVTEATDI ARFIKKEFDR THGPGWQCIV GTDFGSFVTH CCGCFIYFCI GSLAILLFRG SPPP

Best Arabidopsis Sequence Match ( AT4G27360.1 )
(BLAST)

001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.