Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026356.1-P | Field mustard | cytosol | 85.44 | 87.13 |
| CDX89255 | Canola | cytosol | 85.44 | 87.13 |
| CDY29301 | Canola | cytosol | 85.44 | 87.13 |
| KRH27167 | Soybean | cytosol | 70.87 | 77.66 |
| KRH25852 | Soybean | cytosol | 42.72 | 74.58 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 69.9 | 66.06 |
| KRH55664 | Soybean | cytosol, mitochondrion, peroxisome | 69.9 | 66.06 |
| Solyc07g063610.2.1 | Tomato | cytosol | 71.84 | 65.49 |
| GSMUA_Achr2P14130_001 | Banana | cytosol | 66.02 | 62.39 |
| PGSC0003DMT400049549 | Potato | cytosol | 71.84 | 61.16 |
| GSMUA_Achr9P29930_001 | Banana | cytosol | 66.02 | 60.71 |
| EER97375 | Sorghum | cytosol | 65.05 | 58.77 |
| AT3G16120.1 | Thale cress | cytosol | 49.51 | 54.84 |
| AT1G52245.1 | Thale cress | cytosol | 48.54 | 53.19 |
| GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 54.37 | 39.72 |
| AT4G15930.1 | Thale cress | cytosol | 33.98 | 28.46 |
| AT1G23220.1 | Thale cress | cytosol | 33.01 | 26.36 |
| AT5G20110.1 | Thale cress | cytosol | 40.78 | 20.1 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | EntrezGene:828844 | ProteinID:AEE85328.1 | ArrayExpress:AT4G27360 | EnsemblPlantsGene:AT4G27360 |
| RefSeq:AT4G27360 | TAIR:AT4G27360 | RefSeq:AT4G27360-TAIR-G | EnsemblPlants:AT4G27360.1 | TAIR:AT4G27360.1 | EMBL:AY063784 |
| EMBL:AY096707 | Unigene:At.27165 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005868 | GO:GO:0005874 | GO:GO:0006810 | GO:GO:0007017 |
| GO:GO:0008092 | GO:GO:0008150 | GO:GO:0008574 | GO:GO:0009987 | GO:GO:0010970 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0030286 | GO:GO:0045505 | GO:GO:0051959 | GO:GO:0060271 | GO:GO:2000582 |
| InterPro:IPR037177 | RefSeq:NP_194466.2 | PFAM:PF01221 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF22 | UniProt:Q8VZW5 |
| SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI00000A04B2 | : | : | : |
Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
Coordinates
chr4:+:13693957..13694663
Molecular Weight (calculated)
11202.4 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.016
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.