Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g063610.2.1 | Tomato | cytosol | 90.08 | 96.46 |
| KRH25852 | Soybean | cytosol | 41.32 | 84.75 |
| KRH27167 | Soybean | cytosol | 64.46 | 82.98 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 71.9 | 79.82 |
| KRH55664 | Soybean | cytosol, mitochondrion, peroxisome | 69.42 | 77.06 |
| AT4G27360.1 | Thale cress | cytosol | 61.16 | 71.84 |
| CDY29301 | Canola | cytosol | 58.68 | 70.3 |
| CDX89255 | Canola | cytosol | 58.68 | 70.3 |
| Bra026356.1-P | Field mustard | cytosol | 58.68 | 70.3 |
| GSMUA_Achr2P14130_001 | Banana | cytosol | 61.98 | 68.81 |
| GSMUA_Achr9P29930_001 | Banana | cytosol | 60.33 | 65.18 |
| EER97375 | Sorghum | cytosol | 60.33 | 64.04 |
| PGSC0003DMT400006527 | Potato | cytosol | 40.5 | 52.13 |
| PGSC0003DMT400019607 | Potato | cytosol | 40.5 | 52.13 |
| GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 49.59 | 42.55 |
| PGSC0003DMT400029467 | Potato | extracellular | 31.41 | 31.93 |
| PGSC0003DMT400032411 | Potato | cytosol, mitochondrion, nucleus, plastid | 35.54 | 29.25 |
| PGSC0003DMT400081918 | Potato | cytosol | 31.41 | 29.23 |
| PGSC0003DMT400053284 | Potato | cytosol | 33.06 | 17.32 |
| PGSC0003DMT400062841 | Potato | plastid | 35.54 | 15.75 |
| PGSC0003DMT400083122 | Potato | cytosol | 33.88 | 15.02 |
Protein Annotations
| EntrezGene:102584457 | Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 |
| GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0030286 | InterPro:IPR037177 | UniProt:M1BNX6 | PFAM:PF01221 | EnsemblPlantsGene:PGSC0003DMG400019247 | PGSC:PGSC0003DMG400019247 |
| EnsemblPlants:PGSC0003DMT400049549 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF22 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI000294BEE4 |
| RefSeq:XP_006360125.1 | SEG:seg | : | : | : | : |
Description
Cytoplasmic dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400019247]
Coordinates
chr7:-:53740297..53741598
Molecular Weight (calculated)
13171.7 Da
IEP (calculated)
4.207
GRAVY (calculated)
0.155
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVIGD TDMLGTMQQD ALDLAAKALD FFDVTEATEI ARFLKKEFDT MYGPGWQCIV GTDFGSFVTH CYGCFIHFYI GSLAILLFKG SAALEDPKAE
101: AEAEADRFSI SPGNSVKSLL Q
101: AEAEADRFSI SPGNSVKSLL Q
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.