Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29301 | Canola | cytosol | 100.0 | 100.0 |
| CDX89255 | Canola | cytosol | 100.0 | 100.0 |
| AT4G27360.1 | Thale cress | cytosol | 87.13 | 85.44 |
| KRH25852 | Soybean | cytosol | 43.56 | 74.58 |
| KRH27167 | Soybean | cytosol | 69.31 | 74.47 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 71.29 | 66.06 |
| KRH55664 | Soybean | cytosol, mitochondrion, peroxisome | 70.3 | 65.14 |
| Solyc07g063610.2.1 | Tomato | cytosol | 70.3 | 62.83 |
| GSMUA_Achr2P14130_001 | Banana | cytosol | 64.36 | 59.63 |
| PGSC0003DMT400049549 | Potato | cytosol | 70.3 | 58.68 |
| GSMUA_Achr9P29930_001 | Banana | cytosol | 64.36 | 58.04 |
| EER97375 | Sorghum | cytosol | 64.36 | 57.02 |
| Bra027190.1-P | Field mustard | cytosol | 47.52 | 51.61 |
| Bra014318.1-P | Field mustard | cytosol | 47.52 | 51.06 |
| Bra018957.1-P | Field mustard | cytosol | 46.53 | 50.0 |
| Bra012751.1-P | Field mustard | cytosol | 29.7 | 38.96 |
| Bra020085.1-P | Field mustard | cytosol, mitochondrion, plastid | 36.63 | 38.54 |
| GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 52.48 | 37.59 |
| Bra038059.1-P | Field mustard | cytosol | 33.66 | 27.42 |
| Bra024572.1-P | Field mustard | cytosol | 33.66 | 26.15 |
| Bra012367.1-P | Field mustard | cytosol | 33.66 | 26.15 |
| Bra006541.1-P | Field mustard | nucleus | 40.59 | 19.62 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | EnsemblPlantsGene:Bra026356 | EnsemblPlants:Bra026356.1 | EnsemblPlants:Bra026356.1-P | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 | InterPro:IPR037177 | UniProt:M4EC47 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF22 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI0002545B0C | : |
Description
AT4G27360 (E=6e-048) | dynein light chain, putative
Coordinates
chrA01:+:9822818..9823336
Molecular Weight (calculated)
10953.3 Da
IEP (calculated)
6.759
GRAVY (calculated)
0.113
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVMGE TDMKQTMKED ALSLAAKALD CFDVTEPTQI ARFIKKEFDR KYGLGWQCIA GTHFGSFLTH CSGCFIHFSV GNLTILLFKG SAGEVASGPT
101: V
101: V
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.