Factsheet for Bra027190.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006272.1-P
Bra006990.1-P
Bra007335.1-P
Bra007841.1-P
Bra023492.1-P
Bra023900.1-P
Bra025392.1-P
Bra031258.1-P
Bra032085.1-P
Bra033098.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	Bra007841.1-P	AT2G24550.1	21798944
AT3G16120.1	Bra032085.1-P	AT2G24550.1	21798944
AT3G16120.1	Bra023900.1-P	AT3G21175.1	21798944
AT3G16120.1	Bra031258.1-P	AT3G21175.1	21798944
AT3G16120.1	Bra025392.1-P	AT3G29320.1	21798944
AT3G16120.1	Bra033098.1-P	AT3G29320.1	21798944
AT3G16120.1	Bra006990.1-P	AT3G53320.1	21798944
AT3G16120.1	Bra007335.1-P	AT3G57540.1	21798944
AT3G16120.1	Bra006272.1-P	AT5G14910.1	21798944
AT3G16120.1	Bra023492.1-P	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97722	Canola	cytosol	100.0	100.0
CDY30135	Canola	cytosol	98.92	98.92
AT3G16120.1	Thale cress	cytosol	90.32	90.32
Bra014318.1-P	Field mustard	cytosol	80.65	79.79
Bra018957.1-P	Field mustard	cytosol	79.57	78.72
Solyc12g044240.1.1	Tomato	cytosol	78.49	77.66
GSMUA_Achr2P19900_001	Banana	cytosol	77.42	77.42
PGSC0003DMT400019607	Potato	cytosol	77.42	76.6
VIT_09s0002g04280.t01	Wine grape	cytosol	76.34	74.74
KRH09878	Soybean	cytosol	76.34	74.74
Solyc03g120690.2.1	Tomato	cytosol	75.27	74.47
GSMUA_Achr10P...	Banana	cytosol	74.19	74.19
KRH23441	Soybean	cytosol	75.27	73.68
PGSC0003DMT400006527	Potato	cytosol	74.19	73.4
GSMUA_Achr7P25190_001	Banana	cytosol	72.04	72.04
GSMUA_Achr7P14400_001	Banana	cytosol	72.04	72.04
KXG33416	Sorghum	cytosol	69.89	69.89
Zm00001d043386_P001	Maize	cytosol	68.82	68.82
TraesCS3D01G296300.1	Wheat	cytosol	69.89	65.66
Os02t0269200-01	Rice	cytosol	69.89	65.66
GSMUA_Achr10P...	Banana	cytosol	70.97	64.71
TraesCS3B01G330900.1	Wheat	cytosol	68.82	64.65
TraesCS3A01G305600.1	Wheat	cytosol	68.82	64.65
EES06648	Sorghum	cytosol	67.74	63.64
TraesCS1D01G203800.1	Wheat	cytosol	67.74	63.64
TraesCS7A01G061500.1	Wheat	cytosol	70.97	62.86
TraesCS1B01G110900.1	Wheat	cytosol	66.67	62.63
TraesCS7D01G056400.1	Wheat	cytosol	69.89	61.9
TraesCS4A01G427300.1	Wheat	cytosol	69.89	61.9
TraesCS2A01G245600.1	Wheat	cytosol	65.59	61.62
TraesCS2B01G143000.1	Wheat	cytosol	65.59	61.62
HORVU3Hr1G073190.1	Barley	cytosol	68.82	61.54
TraesCS5B01G340700.1	Wheat	cytosol	64.52	60.61
TraesCS2B01G427400.1	Wheat	cytosol	63.44	59.6
TraesCS7A01G284100.1	Wheat	cytosol, plastid	50.54	54.02
Zm00001d016016_P001	Maize	cytosol	68.82	53.33
TraesCS4A01G428300.1	Wheat	cytosol	69.89	48.51
Bra026356.1-P	Field mustard	cytosol	51.61	47.52
Bra012751.1-P	Field mustard	cytosol	33.33	40.26
HORVU7Hr1G011400.2	Barley	plastid	69.89	40.12
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	39.78	38.54
Bra024572.1-P	Field mustard	cytosol	38.71	27.69
Bra012367.1-P	Field mustard	cytosol	37.63	26.92
Bra038059.1-P	Field mustard	cytosol	35.48	26.61
Bra006541.1-P	Field mustard	nucleus	44.09	19.62

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	EnsemblPlantsGene:Bra027190	EnsemblPlants:Bra027190.1	EnsemblPlants:Bra027190.1-P	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0030286	InterPro:IPR037177	UniProt:M4EEH8	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000254792B	:

Description

AT3G16120 (E=3e-045) | dynein light chain, putative

Coordinates

chrA05:-:19602583..19602955

Molecular Weight (calculated)

10416.6 Da

IEP (calculated)

6.767

GRAVY (calculated)

0.022

Length

93 amino acids

Sequence
(BLAST)

1: MLEGKAKVED TDMPVKMQMK ALNIASQSLD LFDVSDCQPI AAHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL

Best Arabidopsis Sequence Match ( AT3G16120.1 )
(BLAST)

1: MLEGKAKVEE TDMPVKMQMQ AMKIASQSLD LFDVFDSISI AAHIKKEFDE RYGSGWQCVV GTNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL

Arabidopsis Description

At3g16120 [Source:UniProtKB/TrEMBL;Acc:Q9LW74]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.