Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40947 | Soybean | cytosol | 42.71 | 80.39 |
| Bra012751.1-P | Field mustard | cytosol | 40.62 | 50.65 |
| CDY45106 | Canola | nucleus | 97.92 | 44.76 |
| Bra006541.1-P | Field mustard | nucleus | 95.83 | 44.02 |
| AT5G20110.1 | Thale cress | cytosol | 93.75 | 43.06 |
| VIT_11s0016g05000.t01 | Wine grape | cytosol, nucleus, plastid | 77.08 | 40.88 |
| Bra027190.1-P | Field mustard | cytosol | 38.54 | 39.78 |
| Bra018957.1-P | Field mustard | cytosol | 38.54 | 39.36 |
| Bra014318.1-P | Field mustard | cytosol | 38.54 | 39.36 |
| Bra024572.1-P | Field mustard | cytosol | 52.08 | 38.46 |
| Bra012367.1-P | Field mustard | cytosol | 51.04 | 37.69 |
| Bra026356.1-P | Field mustard | cytosol | 38.54 | 36.63 |
| Bra038059.1-P | Field mustard | cytosol | 42.71 | 33.06 |
| Solyc12g006630.1.1 | Tomato | cytosol | 77.08 | 33.04 |
| PGSC0003DMT400053284 | Potato | cytosol | 77.08 | 32.03 |
| KRH33092 | Soybean | plastid | 46.88 | 30.2 |
| KRH20287 | Soybean | cytosol | 73.96 | 29.1 |
| KRH03712 | Soybean | cytosol | 72.92 | 28.57 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.2 | EnsemblPlantsGene:Bra020085 | EnsemblPlants:Bra020085.1 | EnsemblPlants:Bra020085.1-P | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 | InterPro:IPR037177 | UniProt:M4DU92 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF51 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI0002543351 | : |
Description
AT5G20110 (E=2e-050) | dynein light chain, putative
Coordinates
chrA02:-:4974317..4975902
Molecular Weight (calculated)
10889.3 Da
IEP (calculated)
9.926
GRAVY (calculated)
0.040
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MLTVRILAAD MPGFMQAHAF RCARTTLDSL EKFSSKHMAF NLKKEFDKGY GPAWHCIVGS SFGSFVTHST GCFLYFSMDK LYILLFKTKV RSNAPH
001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH
Arabidopsis Description
At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.