Factsheet for VIT_11s0016g05000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40947	Soybean	cytosol	23.2	82.35
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	40.88	77.08
Solyc12g006630.1.1	Tomato	cytosol	59.12	47.77
PGSC0003DMT400053284	Potato	cytosol	58.56	45.89
KRH03712	Soybean	cytosol	61.88	45.71
KRH20287	Soybean	cytosol	61.33	45.49
VIT_01s0011g05480.t01	Wine grape	cytosol	31.49	44.88
VIT_09s0002g04280.t01	Wine grape	cytosol	23.2	44.21
CDY45106	Canola	nucleus	50.83	43.81
CDX70914	Canola	nucleus	50.83	43.6
Bra006541.1-P	Field mustard	nucleus	50.28	43.54
CDX88858	Canola	nucleus, plastid	50.28	43.54
AT5G20110.1	Thale cress	cytosol	49.72	43.06
VIT_11s0016g03770.t01	Wine grape	cytosol	22.1	41.67
VIT_08s0007g01270.t01	Wine grape	cytosol	22.1	39.6
VIT_19s0014g02850.t01	Wine grape	cytosol	29.28	39.26
VIT_17s0000g05380.t01	Wine grape	cytosol	39.23	38.38
VIT_16s0022g00440.t01	Wine grape	cytosol	31.49	37.25
VIT_05s0077g02110.t01	Wine grape	cytosol	23.76	36.75
VIT_19s0014g03710.t01	Wine grape	cytosol	22.1	36.7
KRH33092	Soybean	plastid	28.18	34.23

Protein Annotations

EntrezGene:100259374	wikigene:100259374	Gene3D:3.30.740.10	MapMan:35.2	EMBL:AM459740	ProteinID:CAN63502
ProteinID:CAN63502.1	ProteinID:CBI28172	ProteinID:CBI28172.3	UniProt:D7TBY7	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EMBL:FN595756	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868	GO:GO:0006810
GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970
GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271
GO:GO:2000582	InterPro:IPR037177	EntrezGene:LOC100259374	wikigene:LOC100259374	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF51	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00015C8B60	ArrayExpress:VIT_11s0016g05000	EnsemblPlantsGene:VIT_11s0016g05000
EnsemblPlants:VIT_11s0016g05000.t01	unigene:Vvi.6602	RefSeq:XP_002281900	RefSeq:XP_002281900.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:4311189..4313198

Molecular Weight (calculated)

20196.4 Da

IEP (calculated)

10.057

GRAVY (calculated)

-0.194

Length

181 amino acids

Sequence
(BLAST)

001: MGSHVKKERG LLCVYSSGEG EKKSEERLSV KKQVGWSWGL RKSKTCRENA QYGGERVVEG GGGVVVEARK SVSCIETNVS SVAAFLQVKV LVTDMPGFMQ
101: VHAFRCARRT FDSLEKFSSK HMAYNIKKEF DKVYGPAWHC IVGSSFGSFV THSTGGFLYF SMEKLFILVF KTKVQRALDS V

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.