Factsheet for VIT_17s0000g05380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g05480.t01	Wine grape	cytosol	30.81	44.88
Solyc03g113540.2.1	Tomato	cytosol, plastid	62.16	44.75
VIT_19s0014g02850.t01	Wine grape	cytosol	31.89	43.7
PGSC0003DMT400062841	Potato	plastid	63.24	42.86
Solyc06g071180.2.1	Tomato	cytosol	60.0	41.26
VIT_09s0002g04280.t01	Wine grape	cytosol	21.08	41.05
PGSC0003DMT400083122	Potato	cytosol	59.46	40.29
KRH03396	Soybean	cytosol	56.22	40.15
VIT_11s0016g03770.t01	Wine grape	cytosol	20.54	39.58
VIT_11s0016g05000.t01	Wine grape	cytosol, nucleus, plastid	38.38	39.23
KRH56986	Soybean	cytosol	55.68	39.02
VIT_19s0014g03710.t01	Wine grape	cytosol	22.7	38.53
VIT_08s0007g01270.t01	Wine grape	cytosol	20.0	36.63
VIT_16s0022g00440.t01	Wine grape	cytosol	29.73	35.95
VIT_05s0077g02110.t01	Wine grape	cytosol	22.16	35.04
Zm00001d009402_P001	Maize	cytosol, mitochondrion	32.97	33.89
OQU86998	Sorghum	cytosol, mitochondrion	32.97	32.28
Os01t0555600-00	Rice	cytosol	32.97	28.64

Protein Annotations

EntrezGene:100263952	wikigene:100263952	Gene3D:3.30.740.10	MapMan:35.2	EMBL:AM485182	ProteinID:CAN75380
ProteinID:CAN75380.1	ProteinID:CCB43133	ProteinID:CCB43133.1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	UniProt:F6GTC4
EMBL:FN594950	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868	GO:GO:0006810
GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970
GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271
GO:GO:2000582	InterPro:IPR037177	EntrezGene:LOC100263952	wikigene:LOC100263952	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF37	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000210A2E9	ArrayExpress:VIT_17s0000g05380	EnsemblPlantsGene:VIT_17s0000g05380
EnsemblPlants:VIT_17s0000g05380.t01	RefSeq:XP_002266193	RefSeq:XP_002266193.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:5844311..5845370

Molecular Weight (calculated)

20850.2 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.471

Length

185 amino acids

Sequence
(BLAST)

001: MDAPPPAESK ERLKKSPVKK EKEKKESQDR RDIKKLSSKE VNDINKVLKV AKEKESQQGH GHDIMRRPSF SLGRRRSFCC SQVELAGFLA STGVKVVSVD
101: MPPFMQIHAV DCARNAYDSL EKFTSKTLAM TLKKEFDGVY GPAWHCIVGT SFGSFVTHSV GGFMYFAMDH KLYILLFKTA VQRAD

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.