Factsheet for PGSC0003DMT400062841

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113540.2.1	Tomato	cytosol, plastid	90.48	96.11
PGSC0003DMT400083122	Potato	cytosol	63.37	63.37
VIT_17s0000g05380.t01	Wine grape	cytosol	42.86	63.24
PGSC0003DMT400081918	Potato	cytosol	20.88	43.85
KRH03396	Soybean	cytosol	41.39	43.63
KRH56986	Soybean	cytosol	41.39	42.8
PGSC0003DMT400006527	Potato	cytosol	13.55	39.36
PGSC0003DMT400019607	Potato	cytosol	13.55	39.36
Zm00001d009402_P001	Maize	cytosol, mitochondrion	24.18	36.67
PGSC0003DMT400049549	Potato	cytosol	15.75	35.54
PGSC0003DMT400032411	Potato	cytosol, mitochondrion, nucleus, plastid	19.05	35.37
PGSC0003DMT400029467	Potato	extracellular	15.38	35.29
OQU86998	Sorghum	cytosol, mitochondrion	23.81	34.39
PGSC0003DMT400053284	Potato	cytosol	28.57	33.77
Os01t0555600-00	Rice	cytosol	25.27	32.39

Protein Annotations

EntrezGene:102600010	Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0030286	InterPro:IPR037177	UniProt:M1C9L5	PFAM:PF01221	EnsemblPlantsGene:PGSC0003DMG400024462	PGSC:PGSC0003DMG400024462
EnsemblPlants:PGSC0003DMT400062841	PANTHER:PTHR11886	PANTHER:PTHR11886:SF37	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000294C75A
RefSeq:XP_006344979.1	SEG:seg	:	:	:	:

Description

Axonemal dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400024462]

Coordinates

chr3:+:53452445..53454202

Molecular Weight (calculated)

30212.1 Da

IEP (calculated)

10.255

GRAVY (calculated)

-0.500

Length

273 amino acids

Sequence
(BLAST)

001: MDPTLKKQPK PTPFSATTNS KPHPPPDPTP TIQNISSHFS KLYANHKILK SGHRHPPPVD THLQAKTLAV ASSAFDSSCS ALTKSKSQHG RRYVQKDVDK
101: AIVLQEKGEI KKIPNKEKEL KKEVDVKRAL ALLSKDQDSE QLKGFQQRPS FSLSLNGGGR RKSFGCSQTE LADFFSCSGV KVVSVDMPPF MQIHAVDFAR
201: KAHDSLEKFS SKSLGFSLKK EFDGVYGPAW HCIVGTSFGS FVTHSVGGFI YFSMDHKLYV LLFKTTVQKA ESS

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.