CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56986	Soybean	cytosol	93.44	91.67
KRH40947	Soybean	cytosol	14.67	74.51
VIT_17s0000g05380.t01	Wine grape	cytosol	40.15	56.22
KRH08469	Soybean	cytosol	25.1	50.0
KRH70126	Soybean	cytosol	25.1	48.87
KRH60372	Soybean	cytosol	24.71	48.12
KRH41675	Soybean	cytosol	24.71	48.12
Solyc03g113540.2.1	Tomato	cytosol, plastid	42.86	43.19
Solyc06g071180.2.1	Tomato	cytosol	44.79	43.12
KRH27167	Soybean	cytosol	15.44	42.55
PGSC0003DMT400083122	Potato	cytosol	44.02	41.76
PGSC0003DMT400062841	Potato	plastid	43.63	41.39
KRH09878	Soybean	cytosol	15.06	41.05
KRH23441	Soybean	cytosol	15.06	41.05
KRH60274	Soybean	cytosol	14.67	40.86
KRH41561	Soybean	cytosol	14.29	39.78
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	16.6	39.45
Zm00001d009402_P001	Maize	cytosol, mitochondrion	26.25	37.78
OQU86998	Sorghum	cytosol, mitochondrion	26.25	35.98
KRH37076	Soybean	cytosol	16.22	35.59
KRH25852	Soybean	cytosol	8.11	35.59
KRH12076	Soybean	cytosol	15.83	33.61
KRH27230	Soybean	cytosol	19.3	32.89
KRH49195	Soybean	cytosol	13.9	32.14
Os01t0555600-00	Rice	cytosol	26.25	31.92
KRH22104	Soybean	cytosol, plastid	18.53	30.57
KRH20287	Soybean	cytosol	28.57	30.33
KRH03712	Soybean	cytosol	28.57	30.2
KRH33092	Soybean	plastid	17.37	30.2
KRH12077	Soybean	cytosol	15.83	29.5
KRH37077	Soybean	mitochondrion	15.83	26.11
KRH40946	Soybean	plastid	6.56	14.66

Protein Annotations

EntrezGene:100800184	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02010345	EMBL:BT098929	UniProt:C6TMH5
InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	EnsemblPlantsGene:GLYMA_17G095200	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005868	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	EnsemblPlants:KRH03396	ProteinID:KRH03396
ProteinID:KRH03396.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF37	SMART:SM01375	SUPFAM:SSF54648
UniParc:UPI0001B17250	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:7457244..7458943

Molecular Weight (calculated)

28885.0 Da

IEP (calculated)

10.385

GRAVY (calculated)

-0.437

Length

259 amino acids

Sequence
(BLAST)

001: MAHYPLQRRN LAAPESNPTT PNPDLIQTYK PSFLVKHLTN LNLSQPHKTR PPQKHSPLID THLQAKAIQE KESSVTVPVK RTHKEKPQRH CLKLERRELG
101: DHNDKGMVED AKVVKGKPRN PHLEKHDVVV VAAAERMSVS SLAPGGGRRR SFCGTQANLR DVFAINGAKM VSVDMPPFMQ IHAVDCARKA IDSMEKFTSK
201: TLALSLKKEF DGVYGPAWHC IVGTSFGSFV THSVGGFLYF SMDQKLYILL FKTAVQKAA

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.