CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03396	Soybean	cytosol	91.67	93.44
KRH40947	Soybean	cytosol	14.39	74.51
VIT_17s0000g05380.t01	Wine grape	cytosol	39.02	55.68
KRH08469	Soybean	cytosol	24.62	50.0
KRH70126	Soybean	cytosol	24.62	48.87
KRH41675	Soybean	cytosol	24.24	48.12
KRH60372	Soybean	cytosol	24.24	48.12
Solyc03g113540.2.1	Tomato	cytosol, plastid	42.05	43.19
KRH27167	Soybean	cytosol	15.15	42.55
Solyc06g071180.2.1	Tomato	cytosol	43.18	42.38
PGSC0003DMT400062841	Potato	plastid	42.8	41.39
KRH23441	Soybean	cytosol	14.77	41.05
KRH09878	Soybean	cytosol	14.77	41.05
PGSC0003DMT400083122	Potato	cytosol	42.42	41.03
KRH60274	Soybean	cytosol	14.39	40.86
KRH41561	Soybean	cytosol	14.02	39.78
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	16.29	39.45
Zm00001d009402_P001	Maize	cytosol, mitochondrion	25.38	37.22
KRH37076	Soybean	cytosol	15.91	35.59
KRH25852	Soybean	cytosol	7.95	35.59
OQU86998	Sorghum	cytosol, mitochondrion	25.38	35.45
KRH12076	Soybean	cytosol	15.53	33.61
KRH27230	Soybean	cytosol	19.32	33.55
Os01t0555600-00	Rice	cytosol	26.14	32.39
KRH33092	Soybean	plastid	17.8	31.54
KRH49195	Soybean	cytosol	13.26	31.25
KRH22104	Soybean	cytosol, plastid	18.56	31.21
KRH20287	Soybean	cytosol	27.65	29.92
KRH03712	Soybean	cytosol	27.65	29.8
KRH12077	Soybean	cytosol	15.53	29.5
KRH37077	Soybean	mitochondrion	15.53	26.11
KRH40946	Soybean	plastid	6.44	14.66

Protein Annotations

EntrezGene:100806149	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02002805	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_05G031700	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868	GO:GO:0006810
GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970
GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271
GO:GO:2000582	UniProt:I1JZU3	InterPro:IPR037177	EnsemblPlants:KRH56986	ProteinID:KRH56986	ProteinID:KRH56986.1
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF37	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002339F78
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2753222..2754948

Molecular Weight (calculated)

29210.3 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.470

Length

264 amino acids

Sequence
(BLAST)

001: MAHHSSQRRN LAAPESNPTT PNSNPDLIQT YKPSFLVKHL TNLNLSQTHK TRPPHKHSPL IDTHLQAKAM ATSAIQEKES TVPVKRTHKE KPQRHCLELE
101: RRKLGDPNDK GMVEDAKVVK GKPRNPHLEK HDVVVAAAER MSVSLAPGGG GGRRRSFCGT QADLRDVFAI NGAKMVSVDM PPFMQIHAVD CARKAIDSME
201: KFTSKTLALS LKKEFDGVYG PAWHCIVGTS FGSFVTHSVG GFLYFSMDKK LYILLFKTAV HKAA

Best Arabidopsis Sequence Match ( AT5G20110.1 )
(BLAST)

001: MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV
101: ERDTAARIEA AAEMLTVRIL AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT HSTGCFIYFS MDKLYVLLFK
201: TKVRPASPH

Arabidopsis Description

At5g20110 [Source:UniProtKB/TrEMBL;Acc:Q6NM36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.