CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25852	Soybean	cytosol	51.38	94.92
KRH27167	Soybean	cytosol	77.98	90.43
VIT_19s0014g03710.t01	Wine grape	cytosol	80.73	80.73
Solyc07g063610.2.1	Tomato	cytosol	77.06	74.34
GSMUA_Achr2P14130_001	Banana	cytosol	72.48	72.48
CDY29301	Canola	cytosol	65.14	70.3
Bra026356.1-P	Field mustard	cytosol	65.14	70.3
CDX89255	Canola	cytosol	65.14	70.3
AT4G27360.1	Thale cress	cytosol	66.06	69.9
PGSC0003DMT400049549	Potato	cytosol	77.06	69.42
EER97375	Sorghum	cytosol	67.89	64.91
GSMUA_Achr9P29930_001	Banana	cytosol	65.14	63.39
KRH40947	Soybean	cytosol	26.61	56.86
KRH60274	Soybean	cytosol	46.79	54.84
KRH41561	Soybean	cytosol	46.79	54.84
KRH09878	Soybean	cytosol	46.79	53.68
KRH23441	Soybean	cytosol	45.87	52.63
KRH49195	Soybean	cytosol	43.12	41.96
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	51.38	39.72
KRH37076	Soybean	cytosol	36.7	33.9
KRH12076	Soybean	cytosol	35.78	31.97
KRH12077	Soybean	cytosol	36.7	28.78
KRH08469	Soybean	cytosol	33.95	28.46
KRH41675	Soybean	cytosol	33.95	27.82
KRH60372	Soybean	cytosol	33.95	27.82
KRH70126	Soybean	cytosol	33.95	27.82
KRH37077	Soybean	mitochondrion	35.78	24.84
KRH27230	Soybean	cytosol	32.11	23.03
KRH22104	Soybean	cytosol, plastid	30.28	21.02
KRH33092	Soybean	plastid	27.52	20.13
KRH03712	Soybean	cytosol	42.2	18.78
KRH20287	Soybean	cytosol	41.28	18.44
KRH03396	Soybean	cytosol	39.45	16.6
KRH56986	Soybean	cytosol	39.45	16.29
KRH40946	Soybean	plastid	13.76	12.93

Protein Annotations

EntrezGene:100527224	Gene3D:3.30.740.10	MapMan:35.1	EMBL:ACUP02004035	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlantsGene:GLYMA_06G270500	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005868
GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	UniProt:I1KEH5
InterPro:IPR037177	EnsemblPlants:KRH55664	ProteinID:KRH55664	ProteinID:KRH55664.1	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF22	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00023C8184	:	:

Description

hypothetical protein

Coordinates

chr6:+:45968373..45969621

Molecular Weight (calculated)

12016.6 Da

IEP (calculated)

5.074

GRAVY (calculated)

0.193

Length

109 amino acids

Sequence
(BLAST)

001: MLEGKAVIGE TDMLQTMQQD AMDLASKALD FFDVTEAIKI ARFIKKEFDR MHGPGWQCIV GTDFGSFVTH CCGCFIYFCL GNLAILLFRG SAAPEAHENR
101: FSALDAAKA

Best Arabidopsis Sequence Match ( AT4G27360.1 )
(BLAST)

001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.