Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27167 | Soybean | cytosol | 63.39 | 75.53 |
| GSMUA_Achr2P14130_001 | Banana | cytosol | 73.21 | 75.23 |
| KRH25852 | Soybean | cytosol | 39.29 | 74.58 |
| VIT_19s0014g03710.t01 | Wine grape | cytosol | 66.07 | 67.89 |
| AT4G27360.1 | Thale cress | cytosol | 60.71 | 66.02 |
| KRH55664 | Soybean | cytosol, mitochondrion, peroxisome | 63.39 | 65.14 |
| Solyc07g063610.2.1 | Tomato | cytosol | 65.18 | 64.6 |
| Bra026356.1-P | Field mustard | cytosol | 58.04 | 64.36 |
| CDY29301 | Canola | cytosol | 58.04 | 64.36 |
| CDX89255 | Canola | cytosol | 58.04 | 64.36 |
| EER97375 | Sorghum | cytosol | 65.18 | 64.04 |
| PGSC0003DMT400049549 | Potato | cytosol | 65.18 | 60.33 |
| GSMUA_Achr2P19900_001 | Banana | cytosol | 41.96 | 50.54 |
| GSMUA_Achr10P... | Banana | cytosol | 41.96 | 50.54 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 41.07 | 49.46 |
| GSMUA_Achr7P14400_001 | Banana | cytosol | 39.29 | 47.31 |
| GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 58.93 | 46.81 |
| GSMUA_Achr10P... | Banana | cytosol | 39.29 | 43.14 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 28.57 | 41.56 |
| GSMUA_Achr11P... | Banana | cytosol | 27.68 | 40.26 |
| GSMUA_Achr1P20660_001 | Banana | cytosol | 34.82 | 28.68 |
| GSMUA_Achr9P27210_001 | Banana | nucleus | 38.39 | 28.29 |
| GSMUA_Achr7P12500_001 | Banana | cytosol | 36.61 | 28.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.32 | 28.09 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.1 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 |
| EnsemblPlantsGene:GSMUA_Achr9G29930_001 | EnsemblPlants:GSMUA_Achr9P29930_001 | EnsemblPlants:GSMUA_Achr9T29930_001 | InterPro:IPR037177 | UniProt:M0U4Q0 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF22 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI00029566BA | : |
Description
Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr9G29930_001]
Coordinates
chr9:-:33416372..33417209
Molecular Weight (calculated)
12351.8 Da
IEP (calculated)
4.195
GRAVY (calculated)
0.093
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MMESKAVIGE ADMLQTMQQD ALRLAGKALD LFDVTESTEI ASFMKKGTEE FDQSYGPGWQ CIVGTDFGSF ETHHRGCFIH FSIGSLMILL FRATSAPEVD
101: TTAFIAMESV EV
101: TTAFIAMESV EV
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.