Factsheet for GSMUA_Achr7P12500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27210_001	Banana	nucleus	84.14	80.26
VIT_01s0011g05480.t01	Wine grape	cytosol	66.21	75.59
KRH60372	Soybean	cytosol	63.45	69.17
GSMUA_Achr1P20660_001	Banana	cytosol	64.14	68.38
KRH08469	Soybean	cytosol	60.69	67.69
Solyc01g005460.2.1	Tomato	cytosol	60.69	67.69
KRH41675	Soybean	cytosol	62.07	67.67
KRH70126	Soybean	cytosol	62.07	67.67
PGSC0003DMT400081918	Potato	cytosol	60.0	66.92
AT1G23220.1	Thale cress	cytosol	58.62	65.89
Bra012367.1-P	Field mustard	cytosol	57.93	64.62
CDY41457	Canola	cytosol	57.93	64.62
CDX91705	Canola	cytosol	57.93	64.62
CDY12479	Canola	cytosol	60.0	63.5
CDY25775	Canola	cytosol	59.31	62.77
CDY21425	Canola	cytosol	55.86	62.31
Bra024572.1-P	Field mustard	cytosol	55.86	62.31
CDY04736	Canola	cytosol	55.17	61.54
TraesCS6D01G275800.1	Wheat	cytosol	52.41	53.52
TraesCS2D01G325700.1	Wheat	cytosol	62.76	52.91
TraesCS6A01G295200.1	Wheat	cytosol	53.79	52.7
TraesCS6B01G325300.1	Wheat	cytosol	53.1	52.03
TraesCS2B01G344700.1	Wheat	cytosol	62.76	52.0
TraesCS2A01G337200.1	Wheat	cytosol	62.76	52.0
Zm00001d017947_P001	Maize	cytosol, mitochondrion	53.1	50.0
Zm00001d051789_P002	Maize	cytosol	53.1	49.68
EES05573	Sorghum	cytosol	53.1	48.73
Zm00001d003400_P001	Maize	cytosol	60.0	48.33
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	53.1	48.12
Zm00001d050905_P001	Maize	cytosol	63.45	47.42
Os04t0462600-01	Rice	cytosol	62.07	47.37
EES07042	Sorghum	cytosol, mitochondrion	64.14	46.04
Os02t0580400-01	Rice	cytosol	60.69	44.22
GSMUA_Achr11P...	Banana	cytosol	23.45	44.16
GSMUA_Achr8P30040_001	Banana	cytosol	23.45	44.16
GSMUA_Achr7P25190_001	Banana	cytosol	26.21	40.86
TraesCS6D01G189000.1	Wheat	cytosol	57.24	39.9
GSMUA_Achr10P...	Banana	cytosol	25.52	39.78
TraesCS6B01G224400.1	Wheat	cytosol	56.55	39.61
GSMUA_Achr2P19900_001	Banana	cytosol	24.83	38.71
GSMUA_Achr2P14130_001	Banana	cytosol	28.28	37.61
GSMUA_Achr9P29930_001	Banana	cytosol	28.28	36.61
GSMUA_Achr7P14400_001	Banana	cytosol	23.45	36.56
Zm00001d016977_P002	Maize	cytosol	62.07	33.96
GSMUA_Achr10P...	Banana	cytosol	22.76	32.35
GSMUA_AchrUn_...	Banana	cytosol	17.93	29.21
EES10953	Sorghum	plastid	62.07	27.52
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	22.76	23.4

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	ncoils:Coil	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0030286	EnsemblPlantsGene:GSMUA_Achr7G12500_001	EnsemblPlants:GSMUA_Achr7P12500_001	EnsemblPlants:GSMUA_Achr7T12500_001	InterPro:IPR037177	UniProt:M0TGY8
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF53	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000295F51F

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr7G12500_001]

Coordinates

chr7:+:9989660..9992484

Molecular Weight (calculated)

16232.6 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.310

Length

145 amino acids

Sequence
(BLAST)

001: MRGAAKKAAV EGASEELERR SQYLSSLIQR TKVKSEADQD KKEPPNVKVR AADMPLALQK RAFKCARETL ASMPKLESKR LACALKKAHL TYTVEFDSTY
101: GPAWHCIVGT SFGSYVTHSL GGFLYFSIDK VYILLFRTAV EPIDR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.