Factsheet for Os04t0462600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G325700.1	Wheat	cytosol	67.37	74.42
TraesCS2A01G337200.1	Wheat	cytosol	68.42	74.29
TraesCS2B01G344700.1	Wheat	cytosol	67.89	73.71
Zm00001d003400_P001	Maize	cytosol	68.42	72.22
VIT_01s0011g05480.t01	Wine grape	cytosol	45.79	68.5
GSMUA_Achr1P20660_001	Banana	cytosol	44.74	62.5
GSMUA_Achr7P12500_001	Banana	cytosol	47.37	62.07
KRH60372	Soybean	cytosol	43.16	61.65
KRH70126	Soybean	cytosol	43.16	61.65
KRH41675	Soybean	cytosol	43.16	61.65
KRH08469	Soybean	cytosol	42.11	61.54
Solyc01g005460.2.1	Tomato	cytosol	42.11	61.54
PGSC0003DMT400081918	Potato	cytosol	42.11	61.54
Os02t0580400-01	Rice	cytosol	63.68	60.8
GSMUA_Achr9P27210_001	Banana	nucleus	47.89	59.87
Bra012367.1-P	Field mustard	cytosol	40.53	59.23
CDX91705	Canola	cytosol	40.53	59.23
CDY41457	Canola	cytosol	40.53	59.23
AT1G23220.1	Thale cress	cytosol	40.0	58.91
CDY21425	Canola	cytosol	39.47	57.69
Bra024572.1-P	Field mustard	cytosol	39.47	57.69
CDY04736	Canola	cytosol	38.95	56.92
CDY25775	Canola	cytosol	40.53	56.2
CDY12479	Canola	cytosol	40.53	56.2
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	46.84	55.62
EES10953	Sorghum	plastid	66.84	38.84
Os02t0269200-01	Rice	cytosol	20.0	38.38
Os01t0256400-01	Rice	cytosol, nucleus	20.0	29.23
Os01t0555600-00	Rice	cytosol	28.95	25.82
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	12.63	17.39

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EMBL:AK111125	ProteinID:BAF14918.1	ProteinID:BAS89564.1	ncoils:Coil
InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	ProteinID:EEE61137.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005868	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	EnsemblPlantsGene:Os04g0462600	EnsemblPlants:Os04t0462600-01
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF61	UniProt:Q0JCL9	SMART:SM01375	SUPFAM:SSF54648
UniParc:UPI0000DD90FF	SEG:seg	:	:	:	:

Description

Dynein light chain, type 1 family protein. (Os04t0462600-01)

Coordinates

chr4:-:23108129..23110654

Molecular Weight (calculated)

21256.4 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.765

Length

190 amino acids

Sequence
(BLAST)

001: MDRASEELER RSRYLSSLVR RTKLADPPEP EPEPEPEPER EREREVAAKE SGGGEGKGGK VVEEKEVKAA KEKKEKEKEA KVPRGEGGNG EEKKVAVRVR
101: AADMPPALQR RAIRVALEAT AAMPRIDSKR LALALKKEFD TTYGPAWHCI VGTSFGSYVT HSLGGFLYFS VDKLYILLFR TAVEPLSYQR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.