Factsheet for GSMUA_Achr9P27210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P12500_001	Banana	cytosol	80.26	84.14
VIT_01s0011g05480.t01	Wine grape	cytosol	61.18	73.23
KRH70126	Soybean	cytosol	59.21	67.67
Solyc01g005460.2.1	Tomato	cytosol	57.24	66.92
GSMUA_Achr1P20660_001	Banana	cytosol	59.87	66.91
KRH60372	Soybean	cytosol	57.89	66.17
KRH08469	Soybean	cytosol	56.58	66.15
KRH41675	Soybean	cytosol	56.58	64.66
PGSC0003DMT400081918	Potato	cytosol	55.26	64.62
AT1G23220.1	Thale cress	cytosol	53.29	62.79
Bra012367.1-P	Field mustard	cytosol	53.29	62.31
CDY41457	Canola	cytosol	53.29	62.31
CDX91705	Canola	cytosol	53.29	62.31
CDY21425	Canola	cytosol	52.63	61.54
Bra024572.1-P	Field mustard	cytosol	52.63	61.54
CDY12479	Canola	cytosol	55.26	61.31
CDY04736	Canola	cytosol	51.97	60.77
CDY25775	Canola	cytosol	54.61	60.58
TraesCS6D01G275800.1	Wheat	cytosol	50.0	53.52
TraesCS2D01G325700.1	Wheat	cytosol	60.53	53.49
TraesCS6A01G295200.1	Wheat	cytosol	51.32	52.7
TraesCS2B01G344700.1	Wheat	cytosol	60.53	52.57
TraesCS2A01G337200.1	Wheat	cytosol	60.53	52.57
TraesCS6B01G325300.1	Wheat	cytosol	50.66	52.03
Zm00001d017947_P001	Maize	cytosol, mitochondrion	50.66	50.0
Zm00001d051789_P002	Maize	cytosol	50.66	49.68
Zm00001d003400_P001	Maize	cytosol	58.55	49.44
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	51.32	48.75
EES05573	Sorghum	cytosol	50.0	48.1
Os04t0462600-01	Rice	cytosol	59.87	47.89
Zm00001d050905_P001	Maize	cytosol	58.55	45.88
EES07042	Sorghum	cytosol, mitochondrion	59.87	45.05
GSMUA_Achr11P...	Banana	cytosol	22.37	44.16
GSMUA_Achr8P30040_001	Banana	cytosol	22.37	44.16
Os02t0580400-01	Rice	cytosol	55.92	42.71
TraesCS6D01G189000.1	Wheat	cytosol	54.61	39.9
GSMUA_Achr7P25190_001	Banana	cytosol	24.34	39.78
TraesCS6B01G224400.1	Wheat	cytosol	53.95	39.61
GSMUA_Achr10P...	Banana	cytosol	23.68	38.71
GSMUA_Achr2P14130_001	Banana	cytosol	27.63	38.53
GSMUA_Achr9P29930_001	Banana	cytosol	28.29	38.39
GSMUA_Achr2P19900_001	Banana	cytosol	23.03	37.63
GSMUA_Achr7P14400_001	Banana	cytosol	21.05	34.41
Zm00001d016977_P002	Maize	cytosol	57.24	32.83
GSMUA_AchrUn_...	Banana	cytosol	19.08	32.58
GSMUA_Achr10P...	Banana	cytosol	21.05	31.37
EES10953	Sorghum	plastid	59.21	27.52
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	23.03	24.82

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr9G27210_001	EnsemblPlants:GSMUA_Achr9P27210_001	EnsemblPlants:GSMUA_Achr9T27210_001	InterPro:IPR037177	UniProt:M0U3X8	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF53	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002949554	SEG:seg

Description

Putative Dynein light chain 1, cytoplasmic [Source:GMGC_GENE;Acc:GSMUA_Achr9G27210_001]

Coordinates

chr9:-:31462198..31466844

Molecular Weight (calculated)

17097.7 Da

IEP (calculated)

10.465

GRAVY (calculated)

-0.395

Length

152 amino acids

Sequence
(BLAST)

001: MRGAAKKAAS EELERRSQYL SSLVQRTKIM GDNAAAAADH DKKEEMNVKV RAADMSLALQ KHAFRCARET LTSMPKLESK RLALALKKAR PQKQRTKRSI
101: VEFDSTYGPA WHCIVGTSFG SYVTHSLGGF LYFSIDKVYI LLFRTAVEPV DR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.