Factsheet for Zm00001d050905_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07042	Sorghum	cytosol, mitochondrion	82.99	79.7
Zm00001d003400_P001	Maize	cytosol	64.43	69.44
VIT_01s0011g05480.t01	Wine grape	cytosol	45.36	69.29
Zm00001d016977_P002	Maize	cytosol	90.21	66.04
Os02t0580400-01	Rice	cytosol	67.01	65.33
KRH70126	Soybean	cytosol	44.33	64.66
KRH60372	Soybean	cytosol	44.33	64.66
KRH41675	Soybean	cytosol	44.33	64.66
KRH08469	Soybean	cytosol	43.3	64.62
PGSC0003DMT400081918	Potato	cytosol	42.78	63.85
GSMUA_Achr7P12500_001	Banana	cytosol	47.42	63.45
Solyc01g005460.2.1	Tomato	cytosol	41.75	62.31
AT1G23220.1	Thale cress	cytosol	40.72	61.24
GSMUA_Achr1P20660_001	Banana	cytosol	42.78	61.03
Bra012367.1-P	Field mustard	cytosol	40.72	60.77
CDY41457	Canola	cytosol	40.21	60.0
CDX91705	Canola	cytosol	40.21	60.0
CDY21425	Canola	cytosol	39.69	59.23
CDY04736	Canola	cytosol	39.69	59.23
Bra024572.1-P	Field mustard	cytosol	39.69	59.23
GSMUA_Achr9P27210_001	Banana	nucleus	45.88	58.55
CDY25775	Canola	cytosol	40.72	57.66
CDY12479	Canola	cytosol	40.72	57.66
Zm00001d051789_P002	Maize	cytosol	45.88	57.42
Zm00001d017947_P001	Maize	cytosol, mitochondrion	45.36	57.14
TraesCS6D01G189000.1	Wheat	cytosol	59.79	55.77
TraesCS6B01G224400.1	Wheat	cytosol	58.25	54.59
Zm00001d043386_P001	Maize	cytosol	18.56	38.71
Zm00001d008330_P001	Maize	mitochondrion	20.1	31.97
Zm00001d016016_P001	Maize	cytosol	19.07	30.83
Zm00001d009402_P001	Maize	cytosol, mitochondrion	28.35	30.56
Zm00001d040291_P001	Maize	cytosol, mitochondrion	20.1	30.47

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	ProteinID:AQK53217.1	EMBL:BT067120	UniProt:C0PFQ1	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0030286	InterPro:IPR037177	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF61	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000195CA9D	EnsemblPlantsGene:Zm00001d050905	EnsemblPlants:Zm00001d050905_P001
EnsemblPlants:Zm00001d050905_T001	SEG:seg	:	:	:	:

Description

Dynein light chain type 1 family protein

Coordinates

chr4:-:129476399..129478809

Molecular Weight (calculated)

21527.7 Da

IEP (calculated)

9.560

GRAVY (calculated)

-0.664

Length

194 amino acids

Sequence
(BLAST)

001: MDPASEELER RSRYLSSLIR RTKLSAVPAP SQPEPEPGVT QPTPEPEPES AVEKRGEAKA EPVVDEEEKR EAKQAGDGKG KEIKGKDDGG PKEDNRRKVS
101: VRVRAADMPL PLQRRAVRLA YEAIAAMPRL DSKRLALALK KEFDTAYGPA WHCIVGTSFG SYVTHSLGGF LYFSVDKAYI LLFRTAVEPL VRPR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.