Factsheet for TraesCS6B01G224400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G189000.1	Wheat	cytosol	96.14	95.67
VIT_01s0011g05480.t01	Wine grape	cytosol	41.55	67.72
PGSC0003DMT400081918	Potato	cytosol	41.06	65.38
Os02t0580400-01	Rice	cytosol	61.35	63.82
GSMUA_Achr1P20660_001	Banana	cytosol	41.55	63.24
KRH60372	Soybean	cytosol	40.58	63.16
KRH41675	Soybean	cytosol	40.1	62.41
Solyc01g005460.2.1	Tomato	cytosol	39.13	62.31
KRH08469	Soybean	cytosol	39.13	62.31
KRH70126	Soybean	cytosol	39.61	61.65
CDY41457	Canola	cytosol	38.16	60.77
Bra012367.1-P	Field mustard	cytosol	37.68	60.0
Bra024572.1-P	Field mustard	cytosol	37.68	60.0
CDY21425	Canola	cytosol	37.68	60.0
CDY04736	Canola	cytosol	37.68	60.0
CDX91705	Canola	cytosol	37.68	60.0
AT1G23220.1	Thale cress	cytosol	37.2	59.69
EES07042	Sorghum	cytosol, mitochondrion	57.97	59.41
TraesCS2B01G344700.1	Wheat	cytosol	49.76	58.86
Zm00001d050905_P001	Maize	cytosol	54.59	58.25
CDY12479	Canola	cytosol	37.68	56.93
CDY25775	Canola	cytosol	37.68	56.93
GSMUA_Achr7P12500_001	Banana	cytosol	39.61	56.55
TraesCS6B01G325300.1	Wheat	cytosol	39.13	54.73
GSMUA_Achr9P27210_001	Banana	nucleus	39.61	53.95
Zm00001d016977_P002	Maize	cytosol	55.56	43.4
TraesCS3B01G330900.1	Wheat	cytosol	16.91	35.35
TraesCS2B01G143000.1	Wheat	cytosol	16.43	34.34
TraesCS1B01G110900.1	Wheat	cytosol	15.94	33.33
TraesCS5B01G340700.1	Wheat	cytosol	15.94	33.33
TraesCS2B01G427400.1	Wheat	cytosol	15.46	32.32
TraesCS3B01G205000.1	Wheat	cytosol	18.36	26.95

Protein Annotations

EnsemblPlants:TraesCS6B01G224400.1	EnsemblPlantsGene:TraesCS6B01G224400	Gene3D:3.30.740.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0030286	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	InterPro:IPR037177	PANTHER:PTHR11886	PANTHER:PTHR11886:SF53	PFAM:PF01221	SEG:seg
SMART:SM01375	SUPFAM:SSF54648	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6B:+:341763161..341765923

Molecular Weight (calculated)

23110.9 Da

IEP (calculated)

10.580

GRAVY (calculated)

-0.572

Length

207 amino acids

Sequence
(BLAST)

001: MDPASEELER RSHYLSSLIR RTKLNAAPAP PPRTSHPKPE TKLELERERS PIRRTKLKLN AAPALPPSTT HPETGKLERE PGPKNQNLVE AKALVEREVK
101: EGDGKGKEER KVSVRVRAAD MPVVLQRRAI RLAYDAVSAT PRADGKRLAL VLKKEFDASY GPAWHCIVGT SFGSYVTHTL GGFLYFSVDK VHILLFRTAV
201: EPLGHLR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.