CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050905_P001	Maize	cytosol	79.7	82.99
Os02t0580400-01	Rice	cytosol	69.31	70.35
VIT_01s0011g05480.t01	Wine grape	cytosol	44.06	70.08
KRH60372	Soybean	cytosol	42.57	64.66
KRH41675	Soybean	cytosol	42.57	64.66
KRH08469	Soybean	cytosol	41.58	64.62
GSMUA_Achr7P12500_001	Banana	cytosol	46.04	64.14
KRH70126	Soybean	cytosol	42.08	63.91
PGSC0003DMT400081918	Potato	cytosol	41.09	63.85
GSMUA_Achr1P20660_001	Banana	cytosol	42.08	62.5
Bra012367.1-P	Field mustard	cytosol	40.1	62.31
Solyc01g005460.2.1	Tomato	cytosol	40.1	62.31
AT1G23220.1	Thale cress	cytosol	39.6	62.02
Zm00001d016977_P002	Maize	cytosol	81.19	61.89
CDY41457	Canola	cytosol	39.6	61.54
CDX91705	Canola	cytosol	39.6	61.54
Bra024572.1-P	Field mustard	cytosol	38.61	60.0
CDY21425	Canola	cytosol	38.61	60.0
CDY04736	Canola	cytosol	38.61	60.0
GSMUA_Achr9P27210_001	Banana	nucleus	45.05	59.87
TraesCS6D01G189000.1	Wheat	cytosol	60.89	59.13
CDY25775	Canola	cytosol	40.1	59.12
CDY12479	Canola	cytosol	40.1	59.12
TraesCS6B01G224400.1	Wheat	cytosol	59.41	57.97
EES05573	Sorghum	cytosol	44.06	56.33
KXG33416	Sorghum	cytosol	18.32	39.78
EES10953	Sorghum	plastid	63.37	39.14
EES06648	Sorghum	cytosol	17.82	36.36
EER97375	Sorghum	cytosol	20.3	35.96
EES00507	Sorghum	cytosol	19.31	30.0
OQU86998	Sorghum	cytosol, mitochondrion	27.72	29.63
OQU83188	Sorghum	plastid	16.34	26.19

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:8070560	UniProt:C5XVS2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlants:EES07042	ProteinID:EES07042	ProteinID:EES07042.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005868	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574
GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505
GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	PFAM:PF01221	PANTHER:PTHR11886
PANTHER:PTHR11886:SF61	SMART:SM01375	EnsemblPlantsGene:SORBI_3004G192700	SUPFAM:SSF54648	UniParc:UPI0001A85D4E	RefSeq:XP_002454066.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:54452341..54455278

Molecular Weight (calculated)

22252.4 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.670

Length

202 amino acids

Sequence
(BLAST)

001: MDPASEELER RSRYLSSLIR RTKLSAAPAR APPPQPEPEP EVAVAPPNPN PEPEPEPEAA VGKRGEAKAA EPVAEEKEEE EKREAKEAGD GEKGKEIKAK
101: DDDSRKVSVR VRAADMPLPL QRRAVRLAYE AIAAMPRLDS KRLALALKKE FDTAYGPAWH CIVGTSFGSY VTHSLGGFLY FSVDKAYILL FRTAVEPLGH
201: PR

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.