CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88891
EER88899
EER99130
EER99573
EES05886
KXG25581
KXG36299
OQU90788

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	EER88891	AT2G24550.1	21798944
AT3G16120.1	EER99130	AT2G24550.1	21798944
AT3G16120.1	KXG25581	AT2G24550.1	21798944
AT3G16120.1	EER88899	AT3G21175.1	21798944
AT3G16120.1	KXG36299	AT3G53320.1	21798944
AT3G16120.1	EER99573	AT3G57540.1	21798944
AT3G16120.1	OQU90788	AT3G57540.1	21798944
AT3G16120.1	EES05886	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0269200-01	Rice	cytosol	92.93	92.93
TraesCS4A01G427300.1	Wheat	cytosol	86.87	81.9
TraesCS7A01G061500.1	Wheat	cytosol	84.85	80.0
TraesCS7D01G056400.1	Wheat	cytosol	83.84	79.05
Zm00001d016016_P001	Maize	cytosol	86.87	71.67
KXG33416	Sorghum	cytosol	66.67	70.97
AT1G52245.1	Thale cress	cytosol	65.66	69.15
GSMUA_Achr7P25190_001	Banana	cytosol	64.65	68.82
CDY02551	Canola	cytosol	64.65	68.09
Bra018957.1-P	Field mustard	cytosol	64.65	68.09
Bra014318.1-P	Field mustard	cytosol	64.65	68.09
Solyc12g044240.1.1	Tomato	cytosol	64.65	68.09
CDY30135	Canola	cytosol	63.64	67.74
CDX97722	Canola	cytosol	63.64	67.74
Bra027190.1-P	Field mustard	cytosol	63.64	67.74
Solyc03g120690.2.1	Tomato	cytosol	63.64	67.02
PGSC0003DMT400019607	Potato	cytosol	63.64	67.02
AT3G16120.1	Thale cress	cytosol	62.63	66.67
PGSC0003DMT400006527	Potato	cytosol	62.63	65.96
KRH09878	Soybean	cytosol	62.63	65.26
KRH23441	Soybean	cytosol	61.62	64.21
TraesCS4A01G428300.1	Wheat	cytosol	86.87	64.18
KRH60274	Soybean	cytosol	59.6	63.44
VIT_09s0002g04280.t01	Wine grape	cytosol	60.61	63.16
KRH41561	Soybean	cytosol	58.59	62.37
VIT_11s0016g03770.t01	Wine grape	cytosol	56.57	58.33
HORVU7Hr1G011400.2	Barley	plastid	86.87	53.09
EER97375	Sorghum	cytosol	51.52	44.74
CDY47528	Canola	cytosol	57.58	43.85
EES00507	Sorghum	cytosol	32.32	24.62
EES05573	Sorghum	cytosol	36.36	22.78
OQU83188	Sorghum	plastid	27.27	21.43
OQU86998	Sorghum	cytosol, mitochondrion	39.39	20.63
EES07042	Sorghum	cytosol, mitochondrion	36.36	17.82
EES10953	Sorghum	plastid	35.35	10.7

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:8080390	UniProt:C5XZZ1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlants:EES06648	ProteinID:EES06648	ProteinID:EES06648.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092
GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF48	SMART:SM01375	EnsemblPlantsGene:SORBI_3004G122500	SUPFAM:SSF54648
unigene:Sbi.18384	TMHMM:TMhelix	UniParc:UPI0001A85F28	RefSeq:XP_002453672.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:13701071..13702077

Molecular Weight (calculated)

10678.8 Da

IEP (calculated)

7.417

GRAVY (calculated)

0.319

Length

99 amino acids

Sequence
(BLAST)

1: MLEGKARVED TDMPARMQAA ATTAASRALD LFDVADFRGI AGHIKTEFDK RYGVGWQCVV GASFGCFFTH TSGTFIYFSL ERLSFLLFKA AAAVAVAAS

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.