CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57540.1	EER88112	AT3G47620.1	21798944
AT3G57540.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034558_P001	Maize	nucleus	77.05	86.54
Os03t0808300-01	Rice	plasma membrane	79.79	82.04
Solyc10g080240.1.1	Tomato	cytosol	12.67	74.0
TraesCS5D01G477500.1	Wheat	nucleus	69.86	66.89
TraesCS5B01G476700.1	Wheat	nucleus	69.86	66.67
TraesCS5A01G464900.1	Wheat	nucleus	70.21	66.56
HORVU5Hr1G111120.3	Barley	cytosol	64.73	60.97
HORVU5Hr1G111130.2	Barley	cytosol, nucleus	68.49	59.17
GSMUA_Achr6P00160_001	Banana	nucleus	50.34	54.24
GSMUA_Achr4P33120_001	Banana	nucleus	48.97	52.57
GSMUA_Achr2P13770_001	Banana	cytosol, nucleus, plastid	49.32	51.43
EER99573	Sorghum	nucleus	54.11	50.48
VIT_08s0007g08280.t01	Wine grape	nucleus	45.55	49.08
KRG95278	Soybean	nucleus	44.52	47.97
AT2G41870.1	Thale cress	nucleus	43.15	45.99
PGSC0003DMT400060978	Potato	nucleus	45.55	45.39
KRH71974	Soybean	nucleus	45.89	44.82
KRH33097	Soybean	nucleus	45.21	44.59
Bra004657.1-P	Field mustard	cytosol	40.75	44.07
Solyc04g015520.2.1	Tomato	nucleus	45.55	43.89
CDX79905	Canola	nucleus	40.41	43.87
CDY48774	Canola	nucleus	40.41	43.7
Solyc10g080230.1.1	Tomato	cytosol	23.63	43.67
PGSC0003DMT400070037	Potato	nucleus	45.55	41.96
CDX72021	Canola	nucleus	39.04	41.91
Bra007335.1-P	Field mustard	nucleus	41.78	41.64
CDY06095	Canola	nucleus	41.1	40.96
AT3G57540.1	Thale cress	nucleus	39.73	39.19
KRH66963	Soybean	nucleus	28.77	37.33
EES05380	Sorghum	mitochondrion	21.92	19.22
OQU85140	Sorghum	cytosol	22.6	18.38
KXG40319	Sorghum	nucleus	20.55	14.15
EES06158	Sorghum	nucleus, plastid	25.0	12.81
EES11442	Sorghum	nucleus, plastid	18.84	10.32
KXG23993	Sorghum	nucleus	15.41	9.78
EES10116	Sorghum	nucleus, plastid	16.78	9.59

Protein Annotations

EnsemblPlants:OQU90788	EnsemblPlantsGene:SORBI_3001G045600	EntrezGene:8057103	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF7	PFAM:PF03763	ProteinID:OQU90788	ProteinID:OQU90788.1	RefSeq:XP_002463686.1	SEG:seg
UniParc:UPI0001A8207C	UniProt:A0A1Z5S4D9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3374226..3376430

Molecular Weight (calculated)

31816.1 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.750

Length

292 amino acids

Sequence
(BLAST)

001: MLHEQQAPPS PPPEVEAAPP PVPSAPSPAR NHHHHDGDGD VHDVEVTTFR DIHPLTPDVP TPPARTRSWD TASHRSFSSE EQFMTMSREF TAMVAAGATM
101: QTGGGANGNG GYDGDQLTSI GEDELEETNP LAIVPDSHPI ATPARSRASA AASASGLEVV PAPTPTPQQP PAHVEASQVK KEEVETKVSA WQTNEVAKIN
201: NRFKREEVVI NGWETEQVEK ASAWLKKIER KLDEQRAKAV EKTQNDIAKA RRKAEEKRAS AEAKRGLKLA KVLELANFMK AVGRVPTKRS FF

Best Arabidopsis Sequence Match ( AT2G41870.1 )
(BLAST)

001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS

Arabidopsis Description

Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.