Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | KRH03466 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH54542 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH56919 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH63357 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33097 | Soybean | nucleus | 88.96 | 89.86 |
| KRG95278 | Soybean | nucleus | 62.54 | 69.0 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 59.53 | 65.68 |
| PGSC0003DMT400060978 | Potato | nucleus | 58.19 | 59.39 |
| Solyc10g080230.1.1 | Tomato | cytosol | 30.43 | 57.59 |
| KRH66963 | Soybean | nucleus | 42.47 | 56.44 |
| Solyc04g015520.2.1 | Tomato | nucleus | 56.52 | 55.78 |
| Zm00001d006626_P001 | Maize | nucleus | 48.49 | 55.56 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 46.49 | 54.72 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 49.5 | 54.61 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 48.49 | 53.31 |
| PGSC0003DMT400070037 | Potato | nucleus | 55.85 | 52.68 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 48.83 | 52.14 |
| CDX79905 | Canola | nucleus | 45.82 | 50.93 |
| AT2G41870.1 | Thale cress | nucleus | 46.49 | 50.73 |
| Zm00001d034558_P001 | Maize | nucleus | 43.81 | 50.38 |
| Zm00001d021839_P001 | Maize | nucleus | 49.5 | 50.34 |
| CDY48774 | Canola | nucleus | 44.82 | 49.63 |
| Os03t0808300-01 | Rice | plasma membrane | 46.82 | 49.3 |
| CDX72021 | Canola | nucleus | 44.82 | 49.26 |
| Bra004657.1-P | Field mustard | cytosol | 44.48 | 49.26 |
| EER99573 | Sorghum | nucleus | 51.17 | 48.88 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 49.5 | 48.05 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 49.83 | 47.91 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 49.5 | 47.9 |
| Os07t0569100-01 | Rice | plasma membrane | 50.5 | 47.78 |
| CDY06095 | Canola | nucleus | 46.82 | 47.78 |
| Bra007335.1-P | Field mustard | nucleus | 46.49 | 47.44 |
| AT3G57540.1 | Thale cress | nucleus | 45.48 | 45.95 |
| OQU90788 | Sorghum | nucleus | 44.82 | 45.89 |
| Os07t0208600-01 | Rice | nucleus | 39.46 | 45.04 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 40.47 | 43.53 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 44.82 | 43.51 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 44.15 | 43.28 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 40.13 | 43.17 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 44.15 | 43.14 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 39.8 | 42.96 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 40.13 | 42.25 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 41.47 | 40.0 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 44.82 | 39.65 |
| KRH42640 | Soybean | nucleus | 19.06 | 15.53 |
| KRH58742 | Soybean | nucleus | 19.06 | 15.53 |
| KRH42459 | Soybean | nucleus | 23.41 | 13.73 |
| KRH58560 | Soybean | nucleus | 23.08 | 13.61 |
| KRH47718 | Soybean | nucleus | 17.73 | 11.3 |
| KRH06283 | Soybean | cytosol | 17.06 | 10.78 |
| KRH42599 | Soybean | nucleus | 19.06 | 10.56 |
| KRH58701 | Soybean | nucleus | 19.06 | 10.56 |
| KRH44798 | Soybean | nucleus | 18.73 | 10.16 |
Protein Annotations
| EMBL:ACUP02001129 | EnsemblPlants:KRH71974 | EnsemblPlantsGene:GLYMA_02G182600 | EntrezGene:100784687 | InterPro:Remorin_C | ncoils:Coil |
| PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 | PFAM:PF03763 | ProteinID:KRH71974 | ProteinID:KRH71974.1 | SEG:seg |
| UniParc:UPI000233723B | UniProt:K7K9B1 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:31342036..31344739
Molecular Weight (calculated)
33245.5 Da
IEP (calculated)
7.379
GRAVY (calculated)
-0.944
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNDQTPSTS HGTEQHHNES AENEPQIREI YALTPPPRRE PNFETHTHSH SHDSSSVSIE GGSSENFSMS REFSALVLAG SSIENNITTP SQMSLNTMHG
101: NEEGVNSYTN SNNNYNNNNN INNNSYNNLG RIGEDEMLMM EETNPLAIVA DINPLEAVSS SSPPRRGGGT SSGSGGALNE VTVQRVRKEE VEAKISAWQN
201: AKVAKINNRF KREDAVINGW ENEQVQKASS WMKKVERKLE EKRARALEKM QNDVAKAHRK AEERRASAEA KRGTKVARVL EIANLMRAVG RAPTKRSFF
101: NEEGVNSYTN SNNNYNNNNN INNNSYNNLG RIGEDEMLMM EETNPLAIVA DINPLEAVSS SSPPRRGGGT SSGSGGALNE VTVQRVRKEE VEAKISAWQN
201: AKVAKINNRF KREDAVINGW ENEQVQKASS WMKKVERKLE EKRARALEKM QNDVAKAHRK AEERRASAEA KRGTKVARVL EIANLMRAVG RAPTKRSFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.