Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79905 | Canola | nucleus | 77.74 | 79.18 |
| Bra004657.1-P | Field mustard | cytosol | 77.74 | 78.89 |
| CDY48774 | Canola | nucleus | 77.37 | 78.52 |
| Solyc10g080240.1.1 | Tomato | cytosol | 13.5 | 74.0 |
| AT3G57540.1 | Thale cress | nucleus | 67.88 | 62.84 |
| KRG95278 | Soybean | nucleus | 49.63 | 50.18 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 49.63 | 50.18 |
| Zm00001d034558_P001 | Maize | nucleus | 47.08 | 49.62 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 46.72 | 47.23 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 46.35 | 46.69 |
| KRH33097 | Soybean | nucleus | 50.37 | 46.62 |
| KRH71974 | Soybean | nucleus | 50.73 | 46.49 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 43.07 | 46.46 |
| PGSC0003DMT400060978 | Potato | nucleus | 49.63 | 46.42 |
| Solyc10g080230.1.1 | Tomato | cytosol | 26.28 | 45.57 |
| Solyc04g015520.2.1 | Tomato | nucleus | 50.37 | 45.54 |
| Os03t0808300-01 | Rice | plasma membrane | 45.99 | 44.37 |
| Zm00001d006626_P001 | Maize | nucleus | 41.97 | 44.06 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 44.53 | 43.57 |
| PGSC0003DMT400070037 | Potato | nucleus | 50.0 | 43.22 |
| OQU90788 | Sorghum | nucleus | 45.99 | 43.15 |
| Os07t0208600-01 | Rice | nucleus | 40.88 | 42.75 |
| Zm00001d021839_P001 | Maize | nucleus | 44.53 | 41.5 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 45.99 | 41.31 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 46.35 | 41.23 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 45.99 | 41.18 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 41.24 | 40.79 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 41.24 | 40.65 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 40.88 | 40.29 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 45.26 | 40.26 |
| EER99573 | Sorghum | nucleus | 45.99 | 40.26 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 41.61 | 40.14 |
| Os07t0569100-01 | Rice | plasma membrane | 45.99 | 39.87 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 44.53 | 39.48 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 44.53 | 39.23 |
| KRH66963 | Soybean | nucleus | 32.12 | 39.11 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 47.08 | 38.17 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 42.7 | 37.74 |
| AT1G67590.1 | Thale cress | nucleus | 24.09 | 19.02 |
| AT2G02170.2 | Thale cress | nucleus | 26.64 | 15.02 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 24.09 | 12.97 |
| AT1G53860.1 | Thale cress | nucleus | 19.34 | 11.99 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818787 | UniProt:A0A178VZY2 | ProteinID:AAB63554.1 | ProteinID:AAM14826.1 | ProteinID:AEC10043.1 |
| EMBL:AF326883 | EMBL:AF339703 | ArrayExpress:AT2G41870 | EnsemblPlantsGene:AT2G41870 | RefSeq:AT2G41870 | TAIR:AT2G41870 |
| RefSeq:AT2G41870-TAIR-G | EnsemblPlants:AT2G41870.1 | TAIR:AT2G41870.1 | Unigene:At.14701 | ncoils:Coil | GO:GO:0008150 |
| RefSeq:NP_181718.1 | ProteinID:OAP10392.1 | UniProt:P93758 | PFAM:PF03763 | PO:PO:0000013 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | InterPro:Remorin_C | UniParc:UPI00000A379C | SEG:seg | : | : |
Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
Coordinates
chr2:-:17470865..17472984
Molecular Weight (calculated)
30946.2 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.949
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.