Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | KRH03466 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH54542 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH56919 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | KRH63357 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66963 | Soybean | nucleus | 71.22 | 85.78 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 64.58 | 64.58 |
| KRH33097 | Soybean | nucleus | 69.0 | 63.18 |
| KRH71974 | Soybean | nucleus | 69.0 | 62.54 |
| PGSC0003DMT400060978 | Potato | nucleus | 61.25 | 56.66 |
| Solyc10g080230.1.1 | Tomato | cytosol | 32.84 | 56.33 |
| Solyc04g015520.2.1 | Tomato | nucleus | 60.89 | 54.46 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 53.51 | 53.51 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 53.14 | 52.94 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 48.71 | 51.97 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 53.14 | 51.43 |
| PGSC0003DMT400070037 | Potato | nucleus | 60.15 | 51.42 |
| Zm00001d006626_P001 | Maize | nucleus | 49.45 | 51.34 |
| CDX72021 | Canola | nucleus | 50.55 | 50.37 |
| Bra004657.1-P | Field mustard | cytosol | 49.82 | 50.0 |
| CDX79905 | Canola | nucleus | 49.45 | 49.81 |
| AT2G41870.1 | Thale cress | nucleus | 50.18 | 49.63 |
| CDY48774 | Canola | nucleus | 49.08 | 49.26 |
| CDY06095 | Canola | nucleus | 52.4 | 48.46 |
| Bra007335.1-P | Field mustard | nucleus | 52.4 | 48.46 |
| AT3G57540.1 | Thale cress | nucleus | 52.77 | 48.31 |
| Zm00001d034558_P001 | Maize | nucleus | 46.13 | 48.08 |
| Zm00001d021839_P001 | Maize | nucleus | 52.03 | 47.96 |
| Os03t0808300-01 | Rice | plasma membrane | 48.71 | 46.48 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 52.03 | 45.78 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 52.03 | 45.34 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 51.66 | 45.31 |
| Os07t0569100-01 | Rice | plasma membrane | 52.77 | 45.25 |
| EER99573 | Sorghum | nucleus | 52.03 | 45.05 |
| OQU90788 | Sorghum | nucleus | 47.97 | 44.52 |
| Os07t0208600-01 | Rice | nucleus | 42.8 | 44.27 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 47.23 | 41.97 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 46.86 | 41.5 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 46.86 | 41.23 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 41.7 | 40.65 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 40.96 | 40.07 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 40.96 | 39.93 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 41.33 | 39.44 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 44.65 | 39.03 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 47.97 | 38.46 |
| KRH42640 | Soybean | nucleus | 20.66 | 15.26 |
| KRH58742 | Soybean | nucleus | 20.66 | 15.26 |
| KRH42459 | Soybean | nucleus | 24.72 | 13.14 |
| KRH58560 | Soybean | nucleus | 23.99 | 12.82 |
| KRH47718 | Soybean | nucleus | 20.66 | 11.94 |
| KRH06283 | Soybean | cytosol | 19.93 | 11.42 |
| KRH42599 | Soybean | nucleus | 22.51 | 11.3 |
| KRH58701 | Soybean | nucleus | 22.51 | 11.3 |
| KRH44798 | Soybean | nucleus | 22.14 | 10.89 |
Protein Annotations
| EMBL:ACUP02012098 | EnsemblPlants:KRG95278 | EnsemblPlantsGene:GLYMA_19G141100 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | ProteinID:KRG95278 | ProteinID:KRG95278.1 | SEG:seg | UniParc:UPI00023DE48E |
| UniProt:I1N920 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:-:40233787..40236850
Molecular Weight (calculated)
30007.9 Da
IEP (calculated)
9.022
GRAVY (calculated)
-0.892
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNPTTIIG STTHGSEEED EHITEIREIH ALTPPPPRGR AWETVHTHRS SSLSVASEGG ASSSENFSMS REFSALVLAG SSIDHDNSNN NNSNSPMNEN
101: NNSNSLLGRI REEDLMEETN PLAIVPDNHP LDPVPSSSSQ GVRGGGAARE EHVSVQRVKK EEVDAKISAW QNAKVAKINN RFKREDAVIN GWESEQVQKA
201: SSWMKKVERK LEEKRARAME KMQNDIAKAH RKAEERRASA EAKRGTKVAR VLEIASLMRA VGRPPAKKSF F
101: NNSNSLLGRI REEDLMEETN PLAIVPDNHP LDPVPSSSSQ GVRGGGAARE EHVSVQRVKK EEVDAKISAW QNAKVAKINN RFKREDAVIN GWESEQVQKA
201: SSWMKKVERK LEEKRARAME KMQNDIAKAH RKAEERRASA EAKRGTKVAR VLEIASLMRA VGRPPAKKSF F
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.