CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06283	Soybean	cytosol	95.52	94.71
VIT_09s0002g00360.t01	Wine grape	nucleus	64.18	66.01
PGSC0003DMT400023636	Potato	nucleus	31.98	64.1
Solyc03g123590.2.1	Tomato	nucleus	55.86	56.22
GSMUA_Achr10P...	Banana	nucleus	47.76	49.78
AT1G53860.1	Thale cress	nucleus	46.7	49.55
GSMUA_Achr2P07310_001	Banana	nucleus	51.81	48.8
CDY08209	Canola	nucleus	40.94	45.82
Bra040560.1-P	Field mustard	nucleus	40.94	45.82
CDY68168	Canola	nucleus	40.72	45.58
TraesCS2B01G363600.1	Wheat	plastid	38.81	44.07
TraesCS2D01G343900.1	Wheat	plastid	38.81	43.86
HORVU2Hr1G084090.2	Barley	plastid	38.17	42.82
Os11t0616300-01	Rice	nucleus	42.86	40.77
EES10116	Sorghum	nucleus, plastid	39.45	36.2
Zm00001d048829_P001	Maize	plastid	33.26	33.91
CDY36609	Canola	cytosol	39.87	29.08
Bra039695.1-P	Field mustard	cytosol	39.23	27.14
KRH42459	Soybean	nucleus	27.72	25.49
KRH58560	Soybean	nucleus	27.51	25.44
CDY24070	Canola	extracellular	39.02	25.0
KRH42640	Soybean	nucleus	17.27	22.07
KRH58742	Soybean	nucleus	16.84	21.53
KRG95278	Soybean	nucleus	11.94	20.66
KRH58701	Soybean	nucleus	23.24	20.19
KRH42599	Soybean	nucleus	23.03	20.0
KRH44798	Soybean	nucleus	22.6	19.24
KRH66963	Soybean	nucleus	8.53	17.78
KRH71974	Soybean	nucleus	11.3	17.73
KRH33097	Soybean	nucleus	10.87	17.23
Bra040561.1-P	Field mustard	cytosol	0.85	1.69

Protein Annotations

EMBL:ACUP02004161	EnsemblPlants:KRH47718	EnsemblPlantsGene:GLYMA_07G045800	EntrezGene:100819894	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:KRH47718	ProteinID:KRH47718.1	SEG:seg
UniParc:UPI0002338510	UniProt:K7KZN6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3821516..3826301

Molecular Weight (calculated)

52879.1 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.812

Length

469 amino acids

Sequence
(BLAST)

001: MDLPSHKFFQ PPSALAPHGE ALLTESNMSL YGKSKDDPFA DDFPDPLCKL NLKETSEFVK SLPLPMPNGR AESRGHSVSQ QRRLLDSPST PGRPVFTFSS
101: GLPRKSFPSK WDDAEKWLMS TSCHDSPAHN NNTTKVLVSD SSKVTTRQQQ SDDDVGFKQQ MEGFSEKSRV TEERVSSKAV PNFPWSPLDH HHNTLSAFHG
201: VKDIVLKDKF TDSIEPVLPN LRYLEPAKEG FLFRNQGDGA MQDACTEVVQ HRDIGTEMTP LGSSTTSRCH TPVKISSPPR HNTPASRSGP LALASSACTL
301: DVIQLEECHF SKLQLGTQYD IVPLNWSSSE EEEKEISKSL RHNGSHKADS DCIAAAWEEE EKTKCCLRYQ REEAKIQAWV NLQNAKAEAR SRKLEVKIQK
401: MKSSLEEKLM KRMSVVHRKA EEWRAEARQQ HLEQIHKATE QAQKMIHKHN SQFSRPSSCG CFPCNNNHH

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.