CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039695.1-P	Field mustard	cytosol	91.94	99.26
CDY36609	Canola	cytosol	85.93	97.82
CDY08209	Canola	nucleus	45.49	79.47
CDY68168	Canola	nucleus	44.95	78.52
AT1G53860.1	Thale cress	nucleus	43.58	72.17
PGSC0003DMT400023636	Potato	nucleus	18.17	56.84
VIT_09s0002g00360.t01	Wine grape	nucleus	27.19	43.64
Solyc03g123590.2.1	Tomato	nucleus	25.68	40.34
GSMUA_Achr10P...	Banana	nucleus	24.45	39.78
TraesCS2B01G363600.1	Wheat	plastid	22.4	39.71
TraesCS2D01G343900.1	Wheat	plastid	22.4	39.52
HORVU2Hr1G084090.2	Barley	plastid	22.4	39.23
KRH47718	Soybean	nucleus	25.0	39.02
KRH06283	Soybean	cytosol	25.0	38.69
GSMUA_Achr2P07310_001	Banana	nucleus	25.82	37.95
Os11t0616300-01	Rice	nucleus	25.41	37.73
Zm00001d048829_P001	Maize	plastid	21.58	34.35
EES10116	Sorghum	nucleus, plastid	22.95	32.88
CDY32543	Canola	nucleus	12.16	25.21
CDY12657	Canola	cytosol	12.16	25.21
CDY01823	Canola	nucleus	12.16	25.14
CDX96080	Canola	nucleus	12.16	25.07
CDY09386	Canola	nucleus	12.7	23.19
CDY15819	Canola	nucleus	13.39	22.17
CDY17607	Canola	nucleus	13.11	21.62
CDY03066	Canola	nucleus	11.89	21.59
CDY09599	Canola	nucleus	13.8	21.22
CDY26269	Canola	nucleus	13.52	20.41
CDY12047	Canola	nucleus	13.39	19.6
CDX90244	Canola	nucleus	13.11	19.2
CDX79905	Canola	nucleus	6.97	18.96
CDY48774	Canola	nucleus	6.83	18.52
CDX72021	Canola	nucleus	6.28	16.91
CDY06095	Canola	nucleus	6.42	16.04
CDY62474	Canola	nucleus	12.02	10.07
CDY62472	Canola	nucleus	12.02	10.07

Protein Annotations

MapMan:19.2.6.1.1.5	Gene3D:3.60.20.10	GO:A0A078GC78	UniProt:A0A078GC78	EnsemblPlants:CDY24070	ProteinID:CDY24070
ProteinID:CDY24070.1	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019773	GO:GO:0043161
GO:GO:0051603	EnsemblPlantsGene:GSBRNA2T00024610001	InterPro:IPR023332	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PFAM:PF00227
PFAM:PF03763	PFAM:PF10584	ScanProsite:PS00388	PFscan:PS51475	PANTHER:PTHR31471	PANTHER:PTHR31471:SF3
InterPro:Proteasome_alpha-type	InterPro:Proteasome_alpha_type_5	InterPro:Proteasome_asu_N	InterPro:Proteasome_sua/b	InterPro:Remorin_C	SMART:SM00948
SUPFAM:SSF56235	UniParc:UPI0004EEB2C7	SEG:seg	:	:	:

Description

BnaA06g00680DProteasome endopeptidase complex [Source:UniProtKB/TrEMBL;Acc:A0A078GC78]

Coordinates

chrLK032153:+:256968..262058

Molecular Weight (calculated)

82940.5 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.574

Length

732 amino acids

Sequence
(BLAST)

001: MDITRNSITK LHLQTQSLFP PNMERTLDVE PRMGTNPFAE DFIKSLPISS NQSSNSSSSE MVNERRQSFS TQKSIGEGRS SGQRRVMLME SPCTPGRGVF
101: SFSSSLSGRR RRNFPSKWDD AEKWVTSSHE SPAHSLKNHH IRRDKLASEV PSTEGFIFRD LEEEEEEAQV QHRDMGTEMT PVGSVTTSRC HTPFESTSPA
201: RHNTPSNMSG PLTETKNVID ISEFANKLRL SGSAATQYYN SVTSHWNSRE EEEEEISKSL RHSDMESELQ RSVSVTVWDD EDDKIKFCQR YQREEAKIKA
301: WVNLQDAKAE AQSRKLEVKI QKMRSNFEEK MMKRMDTVHR RAEEWRATAR QQHAEQLKRA AETARKLSNR RGYLVAGRSS CGCLPYKTFA PMFVKYQFTI
401: LQVQVPIQVK NKPKAKACLW PIIKIIRPFK AQNKTKRFAI PVSSNSPINQ LTLTRFYRSK SKKKMFLTRS VYQSVILCLW VHLNVRPFCV SIFPILLLRR
501: TEYDRGVNTF SPEGRLFQVE YAIEAIKLGS TAIGVKTKEG VVLAVEKRIT SPLLEPSSVE KIMEIDDHIG CAMSGLIADA RTLVEHARVE TQNHRFSYGE
601: PMTVESTTQA LCDLALRFGE GDEESMSRPF GVSLLIAGHD ENGPSLYYTD PSGTFWQCNA KAIGSGSEGA DSSLQEQFNK DLSLSEAETI AVSILKQVME
701: EKVTPNNVDI AKVAPAYHLY TPEEVEAVIS RL

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.